RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 LCTP09848 1927 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 M0R135 149 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 RER1O15258 196 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 GIPP09681 153 aaPredicted RBP10.53□□□□□ -0.72
SYNPO-204ENST00000519664 POU3F3P20264 500 aaPredicted RBP10.53□□□□□ -0.72
SYNPO-204ENST00000519664 CRYBA2P53672 197 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 PDZK1IP1Q13113 114 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 ZFP82Q8N141 532 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 IFI44Q8TCB0 444 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF799Q96GE5 643 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 CES1P1Q9UKY3 287 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 B3GALT5Q9Y2C3 310 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 PUS1Q9Y606 427 aaKnown RBP eCLIP10.53□□□□□ -0.72
SYNPO-204ENST00000519664 ESPL1Q14674 2120 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 PLXNA1Q9UIW2 1896 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF728P0DKX0 622 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 ZNF121P58317 390 aaPredicted RBP10.53□□□□□ -0.72
SYNPO-204ENST00000519664 PCBD1P61457 104 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 NHLRC1Q6VVB1 395 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 RFLNBQ8N5W9 214 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 FAM213BQ8TBF2 198 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 TSPAN32Q96QS1 320 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 SPIN2AQ99865 258 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 GABRG3Q99928 467 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 SPIN2BQ9BPZ2 258 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 UTP23Q9BRU9 249 aaKnown RBP10.53□□□□□ -0.72
SYNPO-204ENST00000519664 DNAJB11Q9UBS4 358 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 R4GMQ9 66 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 BDP1A6H8Y1 2624 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 IGHV1OR21-1A0A087WYE8 117 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 CD300LBA8K4G0 201 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 IFNA10P01566 189 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 CTSBP07858 339 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 CHRM2P08172 466 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 RRASP10301 218 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 B4GALT1P15291 398 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 SPINK2P20155 84 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 MSR1P21757 451 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 MECP2P51608 486 aaKnown RBP10.53□□□□□ -0.72
SYNPO-204ENST00000519664 CCL7P80098 99 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 FUT5Q11128 374 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 MYBPHQ13203 477 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 OR10Z1Q8NGY1 313 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 SULT4A1Q9BR01 284 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 MARVELD1Q9BSK0 173 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 SMCO4Q9NRQ5 59 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 CSAG2Q9Y5P2 127 aa10.53□□□□□ -0.72
SYNPO-204ENST00000519664 MCRIP1C9JLW8 97 aa10.52□□□□□ -0.72
SYNPO-204ENST00000519664 XRCC3O43542 346 aa10.52□□□□□ -0.72
SYNPO-204ENST00000519664 RAC2P15153 192 aa10.52□□□□□ -0.72
SYNPO-204ENST00000519664 NKX6-1P78426 367 aaPredicted RBP10.52□□□□□ -0.72
SYNPO-204ENST00000519664 TGFBR3Q03167 851 aa10.52□□□□□ -0.72
SYNPO-204ENST00000519664 OR5AS1Q8N127 324 aa10.52□□□□□ -0.72
SYNPO-204ENST00000519664 ZPLD1Q8TCW7 415 aa10.52□□□□□ -0.72
SYNPO-204ENST00000519664 PPP1R1CQ8WVI7 109 aa10.52□□□□□ -0.72
SYNPO-204ENST00000519664 ROBO4Q8WZ75 1007 aa10.52□□□□□ -0.72
SYNPO-204ENST00000519664 THOC3Q96J01 351 aaKnown RBP10.52□□□□□ -0.72
SYNPO-204ENST00000519664 C4orf45Q96LM5 186 aa10.52□□□□□ -0.72
SYNPO-204ENST00000519664 VSTM2LQ96N03 204 aa10.52□□□□□ -0.72
SYNPO-204ENST00000519664 LRFN1Q9P244 771 aa10.52□□□□□ -0.72
SYNPO-204ENST00000519664 DOPEY2Q9Y3R5 2298 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 H3BMH7 237 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 SLC17A2O00624 439 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 ZNF674Q2M3X9 581 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 OR51A4Q8NGJ6 313 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 OR1J2Q8NGS2 313 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 YIPF5Q969M3 257 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 MARVELD3Q96A59 401 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 ZCCHC4Q9H5U6 513 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 A0A0U1RQK1 487 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 ICAM2P13598 275 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 TBXA2RP21731 343 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 IL2RGP31785 369 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 BRCA1P38398 1863 aaKnown RBP10.52□□□□□ -0.73
SYNPO-204ENST00000519664 HOXA1P49639 335 aaPredicted RBP10.52□□□□□ -0.73
SYNPO-204ENST00000519664 OR51H1Q8NH63 302 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 AKR7LQ8NHP1 331 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 ST8SIA1Q92185 356 aa10.52□□□□□ -0.73
SYNPO-204ENST00000519664 TNS1Q9HBL0 1735 aaKnown RBP10.52□□□□□ -0.73
SYNPO-204ENST00000519664 LILRA5A6NI73 299 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 HS3ST1O14792 307 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 RAB13P51153 203 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 H3F3CQ6NXT2 135 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 NAXDQ8IW45 347 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 SEMA6DQ8NFY4 1073 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 RDH5Q92781 318 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 CCDC74BQ96LY2 380 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 LRFN5Q96NI6 719 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 ZNF2Q9BSG1 426 aaPredicted RBP10.51□□□□□ -0.73
SYNPO-204ENST00000519664 C20orf24Q9BUV8 137 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 SUCNR1Q9BXA5 334 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 LANCL2Q9NS86 450 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 MRM2Q9UI43 246 aaKnown RBP10.51□□□□□ -0.73
SYNPO-204ENST00000519664 TRAPPC2LQ9UL33 140 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 A0A1B0GUH1 482 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 HPXP02790 462 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 DUSP1P28562 367 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 THEM4Q5T1C6 240 aa10.51□□□□□ -0.73
SYNPO-204ENST00000519664 DMKNQ6E0U4 476 aaPredicted RBP10.51□□□□□ -0.73
SYNPO-204ENST00000519664 NPEPL1Q8NDH3 523 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms