RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 RPL18Q07020 188 aaKnown RBP8.64□□□□□ -1.03
VCAN-210ENST00000513960 PRTGQ2VWP7 1150 aa8.64□□□□□ -1.03
VCAN-210ENST00000513960 NPSR1Q6W5P4 371 aa8.64□□□□□ -1.03
VCAN-210ENST00000513960 IL34Q6ZMJ4 242 aa8.64□□□□□ -1.03
VCAN-210ENST00000513960 STX12Q86Y82 276 aa8.64□□□□□ -1.03
VCAN-210ENST00000513960 PRSS58Q8IYP2 241 aa8.64□□□□□ -1.03
VCAN-210ENST00000513960 BCORP1Q8N888 145 aa8.64□□□□□ -1.03
VCAN-210ENST00000513960 NPRL2Q8WTW4 380 aa8.64□□□□□ -1.03
VCAN-210ENST00000513960 HOXB13Q92826 284 aaPredicted RBP8.64□□□□□ -1.03
VCAN-210ENST00000513960 RRNAD1Q96FB5 475 aaKnown RBP8.64□□□□□ -1.03
VCAN-210ENST00000513960 TCTN2Q96GX1 697 aa8.64□□□□□ -1.03
VCAN-210ENST00000513960 MEGF10Q96KG7 1140 aa8.64□□□□□ -1.03
VCAN-210ENST00000513960 TINAGQ9UJW2 476 aa8.64□□□□□ -1.03
VCAN-210ENST00000513960 A0A087WUJ7 227 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 HCRTR2O43614 444 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 CD8AP01732 235 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 LAP3P28838 519 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 MICBQ29980 383 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 DHRS11Q6UWP2 260 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 ZNF440Q8IYI8 595 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 NAXEQ8NCW5 288 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 RAB3CQ96E17 227 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 TOLLIPQ9H0E2 274 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 FAM86C1Q9NVL1 165 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 MRPS18BQ9Y676 258 aaKnown RBP8.63□□□□□ -1.03
VCAN-210ENST00000513960 A0A1B0GV90 55 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 UMAD1C9J7I0 102 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 SLC33A1O00400 549 aaPredicted RBP8.63□□□□□ -1.03
VCAN-210ENST00000513960 FOXS1O43638 330 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 NSA2O95478 260 aaKnown RBP8.63□□□□□ -1.03
VCAN-210ENST00000513960 IFNA2P01563 188 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 GUSBP08236 651 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 OR8U9P0C7N5 309 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 CT45A8P0DMV1 189 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 CT45A9P0DMV2 189 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 CT45A2Q5DJT8 189 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 LINC01590Q5TEZ4 76 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 KCTD18Q6PI47 426 aaPredicted RBP8.63□□□□□ -1.03
VCAN-210ENST00000513960 BIVMQ86UB2 503 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 HSD17B11Q8NBQ5 300 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 OR10H5Q8NGA6 315 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 OR8U1Q8NH10 309 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 BANF2Q9H503 90 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 ZNF701Q9NV72 531 aaPredicted RBP8.63□□□□□ -1.03
VCAN-210ENST00000513960 ICAM5Q9UMF0 924 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 CARHSP1Q9Y2V2 147 aaKnown RBP8.63□□□□□ -1.03
VCAN-210ENST00000513960 CDC14CA4D256 554 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 COLCA2A8K830 154 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 TGFBR3LH3BV60 316 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 KLK3P07288 261 aaPredicted RBP8.63□□□□□ -1.03
VCAN-210ENST00000513960 TACR3P29371 465 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 RBMXP38159 391 aaKnown RBP8.63□□□□□ -1.03
VCAN-210ENST00000513960 GPR3P46089 330 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 RAB5CP51148 216 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 EMP2P54851 167 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 LINC00114Q6XXX2 140 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 ZNF383Q8NA42 475 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 EDAQ92838 391 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 FGGYQ96C11 551 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 LRRC61Q9BV99 259 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 NUDT9Q9BW91 350 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 ALX4Q9H161 411 aaPredicted RBP8.63□□□□□ -1.03
VCAN-210ENST00000513960 SEC61A2Q9H9S3 476 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 HHLA2Q9UM44 414 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 MEMO1Q9Y316 297 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 K7EPK0 472 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 MT-ND4LP03901 98 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 CD63P08962 238 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 ZBTB25P24278 435 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 CAV2P51636 162 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 MFGE8Q08431 387 aaPredicted RBP8.63□□□□□ -1.03
VCAN-210ENST00000513960 MIDNQ504T8 468 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 FAM71E2Q8N5Q1 922 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 C15orf54Q8N8G6 183 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 OR5D18Q8NGL1 313 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 OR10D4PQ8NGN7 298 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 OR14K1Q8NGZ2 314 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 CA5BP1Q8WTZ4 195 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 RLN3Q8WXF3 142 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 SUCNR1Q9BXA5 334 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 KPTNQ9Y664 436 aa8.63□□□□□ -1.03
VCAN-210ENST00000513960 BRWD1Q9NSI6 2320 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 LOC107986453A0A1B0GWG9 222 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 SCDO00767 359 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 LMX1BO60663 402 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 ALOX5APP20292 161 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 RAB5AP20339 215 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 MECP2P51608 486 aaKnown RBP8.62□□□□□ -1.03
VCAN-210ENST00000513960 HSD17B7P56937 341 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 ECH1Q13011 328 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 GGTLC2Q14390 218 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 ZNF813Q6ZN06 617 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 SLC25A42Q86VD7 318 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 OR5H2Q8NGV7 314 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 LMX1AQ8TE12 382 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 MITD1Q8WV92 249 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 LPAR4Q99677 370 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 PNO1Q9NRX1 252 aaKnown RBP8.62□□□□□ -1.03
VCAN-210ENST00000513960 UFSP2Q9NUQ7 469 aa8.62□□□□□ -1.03
VCAN-210ENST00000513960 GFOD1Q9NXC2 390 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms