RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 STAC2Q6ZMT1 411 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 PRRT2Q7Z6L0 340 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 LCORQ96JN0 433 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 HAPLN2Q9GZV7 340 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 CALHM2Q9HA72 323 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 PISDQ9UG56 409 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 ZFP30Q9Y2G7 519 aa10.23□□□□□ -0.77
LIMCH1-217ENST00000512946 ITSN1Q15811 1721 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 NDUFS8O00217 210 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 NTSR1P30989 418 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 SURF2Q15527 256 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 NSUN5P2Q63ZY6 315 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 RTL10Q7L3V2 364 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 ZNF511Q8NB15 262 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 OR5D18Q8NGL1 313 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 DTD2Q96FN9 168 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 ZC3HAV1LQ96H79 300 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 ZMAT3Q9HA38 289 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 BCL2L10Q9HD36 194 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 TAS2R4Q9NYW5 299 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 CGGBP1Q9UFW8 167 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 DMRT1Q9Y5R6 373 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 IFITM10A6NMD0 228 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 BCL3P20749 454 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 ADRA1AP35348 466 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 HRH1P35367 487 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 CLDN15P56746 228 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 FABP5Q01469 135 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 AWAT1Q58HT5 328 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 TMEM116Q8NCL8 245 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 OR10G8Q8NGN5 311 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 OR2T6Q8NHC8 308 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 TOE1Q96GM8 510 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 MS4A8Q9BY19 250 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 GABRA1P14867 456 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 S100A4P26447 101 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 APOBEC1P41238 236 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 EVX2Q03828 476 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 SRYQ05066 204 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 UBE2V2Q15819 145 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 ZNF628Q5EBL2 1059 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 YOD1Q5VVQ6 348 aaPredicted RBP10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 TBPL2Q6SJ96 375 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 TRILQ7L0X0 811 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 MBD3L1Q8WWY6 194 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 POM121L2Q96KW2 1035 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 PMCHL2Q9BQD1 86 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 UTP23Q9BRU9 249 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 SYT11Q9BT88 431 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 OCIAD1Q9NX40 245 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 RASL12Q9NYN1 266 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 UQCR10Q9UDW1 63 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 SPEF2Q9C093 1822 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 PIAS2O75928 621 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 SFT2D2O95562 160 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 DUS4LO95620 317 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 SLC10A3P09131 477 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 SMAGPQ0VAQ4 97 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 HYAL4Q2M3T9 481 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 PSMG4Q5JS54 123 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 FAM71E1Q6IPT2 247 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 MFSD12Q6NUT3 480 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 DPPA3Q6W0C5 159 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 SLCO4C1Q6ZQN7 724 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 MEX3DQ86XN8 651 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 TMEM174Q8WUU8 243 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 EGLN1Q9GZT9 426 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 ZNF385DQ9H6B1 395 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 MTFP1Q9UDX5 166 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 SLC17A4Q9Y2C5 497 aa10.22□□□□□ -0.77
LIMCH1-217ENST00000512946 HCRTR1O43613 425 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 CRHP06850 196 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 RIGQ13278 110 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 IGFBP7Q16270 282 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 TBC1D28Q2M2D7 210 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 FAM26DQ5JW98 314 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 DLEU7Q6UYE1 221 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 NUFIP2Q7Z417 695 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 PIANPQ8IYJ0 282 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 OR5A2Q8NGI9 324 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 OR5M9Q8NGP3 310 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 KIAA1456Q9P272 454 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 R4GMQ9 66 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 C7orf77A4D0Y5 90 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 OR2J3O76001 311 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 GDF1P27539 372 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 DLX1P56177 255 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 ZNF468Q5VIY5 522 aaPredicted RBP10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 FDX2Q6P4F2 183 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 ZNF813Q6ZN06 617 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 CHST14Q8NCH0 376 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 PIGTQ969N2 578 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 ERGIC1Q969X5 290 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 IGSF21Q96ID5 467 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 CXorf36Q9H7Y0 433 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 WASHC3Q9Y3C0 194 aa10.21□□□□□ -0.77
LIMCH1-217ENST00000512946 A0A087WV62 115 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 ZNF737O75373 536 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 NEURL1O76050 574 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 MPC2O95563 127 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms