RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 HTR3BO95264 441 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 CRHP06850 196 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF93P35789 620 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 PNLIPRP2P54317 469 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 DCAF7P61962 342 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 BLOC1S1P78537 153 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 CARD17Q5XLA6 110 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 DNM1P34Q6PK57 102 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 CCDC36Q8IYA8 594 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 SLC22A24Q8N4F4 322 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 NKAIN3Q8N8D7 197 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 OR10R2Q8NGX6 335 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 MAFIPQ8WZ33 124 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 MRPL38Q96DV4 380 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 CPNE2Q96FN4 548 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 RHBDD3Q9Y3P4 386 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 PHF3Q92576 2039 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 MSGN1A6NI15 193 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 SDCBPO00560 298 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 ISG15P05161 165 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 FOLR1P15328 257 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 FBLP22087 321 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 CDAP32320 146 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 CCR5P51681 352 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 HSF1Q00613 529 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 MFAP5Q13361 173 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 HAGHLQ6PII5 290 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 GLIPR1L1Q6UWM5 242 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 H1FNTQ75WM6 255 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 LDLRAD3Q86YD5 345 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 OR5D18Q8NGL1 313 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 OR1N1Q8NGS0 311 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 CTSFQ9UBX1 484 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 PURGQ9UJV8 347 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 LOC390937A0A1W2PQ73 354 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 ZDHHC22Q8N966 263 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 ASB10Q8WXI3 467 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 RNF126Q9BV68 326 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF768Q9H5H4 540 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 GSKIPQ9P0R6 139 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 MLXQ9UH92 298 aa8.23□□□□□ -1.09
LIMCH1-215ENST00000512632 NUDT21O43809 227 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 DUS4LO95620 317 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 IL2RAP01589 272 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 ADCYAP1P18509 176 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 ANOS1P23352 680 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 MMP16P51512 607 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 ARFRP1Q13795 201 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 MICBQ29980 383 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 NKAPLQ5M9Q1 402 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 OR5D14Q8NGL3 314 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 NPRL2Q8WTW4 380 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 RNF133Q8WVZ7 376 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 PIK3IP1Q96FE7 263 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 ZDHHC12Q96GR4 267 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 TLNRD1Q9H1K6 362 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 SLC2A8Q9NY64 477 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 A0A1W2PQD3 144 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 CD37P11049 281 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF20P17024 532 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 HLA-GP17693 338 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 HSD11B1P28845 292 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 SRSF4Q08170 494 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 SGCAQ16586 387 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 PABPC1L2AQ5JQF8 200 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF585AQ6P3V2 769 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 ABHD12BQ7Z5M8 362 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 BAP18Q8IXM2 172 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 OR10S1Q8NGN2 331 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 KCNK17Q96T54 332 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 GPER1Q99527 375 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 HRH4Q9H3N8 390 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 FAM206AQ9NX38 181 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 FAM96BQ9Y3D0 163 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 THADAQ6YHU6 1953 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 GLULP15104 373 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 RAB6AP20340 208 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 FOXK1P85037 733 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 TDGQ13569 410 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 GKN2Q86XP6 184 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 ZSCAN4Q8NAM6 433 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 TMEM234Q8WY98 164 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 PHYHIPLQ96FC7 376 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 ST6GALNAC5Q9BVH7 336 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 A6NIZ1 184 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 SIGLEC6O43699 453 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 CLDN6P56747 220 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 RAP1BP61224 184 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 RAP1AP62834 184 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 SCRN3Q0VDG4 424 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 SDK2Q58EX2 2172 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 PLAC9Q5JTB6 97 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 PHF19Q5T6S3 580 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 H3F3CQ6NXT2 135 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 LINC00518Q8N0U6 118 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 TERB2Q8NHR7 220 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 LPAR5Q9H1C0 372 aa8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF629Q9UEG4 869 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-215ENST00000512632 A0A0A6YYD4 124 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms