RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 IGHV3-9P01782 118 aa7.38□□□□□ -1.23
USP54-215ENST00000497106 CSF1P09603 554 aa7.38□□□□□ -1.23
USP54-215ENST00000497106 EPXP11678 715 aa7.38□□□□□ -1.23
USP54-215ENST00000497106 ARFRP1Q13795 201 aa7.38□□□□□ -1.23
USP54-215ENST00000497106 TSPO2Q5TGU0 170 aa7.38□□□□□ -1.23
USP54-215ENST00000497106 LYPD4Q6UWN0 246 aa7.38□□□□□ -1.23
USP54-215ENST00000497106 MOB3CQ70IA8 216 aa7.38□□□□□ -1.23
USP54-215ENST00000497106 DEDD2Q8WXF8 326 aa7.38□□□□□ -1.23
USP54-215ENST00000497106 DKK4Q9UBT3 224 aa7.38□□□□□ -1.23
USP54-215ENST00000497106 MRPS28Q9Y2Q9 187 aaKnown RBP7.38□□□□□ -1.23
USP54-215ENST00000497106 SF3B6Q9Y3B4 125 aaKnown RBP7.38□□□□□ -1.23
USP54-215ENST00000497106 CTDSP2O14595 271 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 TMEM225BP0DP42 221 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 ATF1P18846 271 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 PMP22Q01453 160 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 PCK2Q16822 640 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 PABPC1L2AQ5JQF8 200 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 OR2W3Q7Z3T1 314 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 CCDC107Q8WV48 283 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 ZCCHC14Q8WYQ9 949 aaKnown RBP7.37□□□□□ -1.23
USP54-215ENST00000497106 BCL2L14Q9BZR8 327 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 DDX28Q9NUL7 540 aaKnown RBP7.37□□□□□ -1.23
USP54-215ENST00000497106 KLHDC2Q9Y2U9 406 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 MAGEB4O15481 346 aaPredicted RBP7.37□□□□□ -1.23
USP54-215ENST00000497106 TNFSF4P23510 183 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 PRSS3P35030 304 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 CD79BP40259 229 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 ZNF133P52736 654 aaPredicted RBP7.37□□□□□ -1.23
USP54-215ENST00000497106 SSBP1Q04837 148 aaKnown RBP7.37□□□□□ -1.23
USP54-215ENST00000497106 UNQ9370/PRO34162Q6UXP9 181 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 CDH24Q86UP0 819 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 SNX29P2Q8IUI4 249 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 TNFAIP8L1Q8WVP5 186 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 PGLYRP3Q96LB9 341 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 SCPEP1Q9HB40 452 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 KMT2EQ8IZD2 1858 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 A0A1B0GVC2 190 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 TRIM64BA6NI03 449 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 FOXL2NBQ6ZUU3 175 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 CD163Q86VB7 1156 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 ZNF584Q8IVC4 421 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 AIFM2Q9BRQ8 373 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 PAPOLGQ9BWT3 736 aaKnown RBP7.37□□□□□ -1.23
USP54-215ENST00000497106 LIN7BQ9HAP6 207 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 MCUBQ9NWR8 336 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 GPR179Q6PRD1 2367 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 C5orf49A4QMS7 147 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 EEF1E1-BLOC1S5C9J1V9 151 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 K7ENP7 123 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 EEF1E1O43324 174 aaKnown RBP7.37□□□□□ -1.23
USP54-215ENST00000497106 NCR1O76036 304 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 LALBAP00709 142 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 ACSM4P0C7M7 580 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 RAB6AP20340 208 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 STOMP27105 288 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 AGTR1P30556 359 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 P2RY14Q15391 338 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 ACTBL2Q562R1 376 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 NSUN5P2Q63ZY6 315 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 ALKBH2Q6NS38 261 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 ZNF774Q6NX45 483 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 CCDC190Q86UF4 302 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 LAX1Q8IWV1 398 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 MKXQ8IYA7 352 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 LINC00469Q8N7U9 141 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 RTL8AQ9BWD3 113 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 RNF167Q9H6Y7 350 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 C14orf119Q9NWQ9 140 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 DCAF16Q9NXF7 216 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 SCP2D1Q9UJQ7 156 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 FOXD3Q9UJU5 478 aaPredicted RBP7.37□□□□□ -1.23
USP54-215ENST00000497106 ZMIZ1Q9ULJ6 1067 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 LHFPL6Q9Y693 200 aa7.37□□□□□ -1.23
USP54-215ENST00000497106 ANKRD34BA5PLL1 514 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 CD3GP09693 182 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 POU3F4P49335 361 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 RBP2P50120 134 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 BCAP31P51572 246 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 TBR1Q16650 682 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 TMEM91Q6ZNR0 172 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 BHLHA15Q7RTS1 189 aaPredicted RBP7.36□□□□□ -1.23
USP54-215ENST00000497106 OR13C5Q8NGS8 318 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 AKR7LQ8NHP1 331 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 ST7LQ8TDW4 575 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 PIGCQ92535 297 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 A0A096LPE4 126 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 A0A1W2PPZ6 126 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 CELA3AP09093 270 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 SNRPBP14678 240 aaKnown RBP7.36□□□□□ -1.23
USP54-215ENST00000497106 CPT2P23786 658 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 FUT6P51993 359 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 MTCP1P56278 107 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 RIN1Q13671 783 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 C3AR1Q16581 482 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 HIST3H3Q16695 136 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 LURAP1LQ8IV03 231 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 OR8B12Q8NGG6 310 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 OR1K1Q8NGR3 316 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 FAM57AQ8TBR7 257 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 ASB5Q8WWX0 329 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms