RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 RAB39BQ96DA2 213 aa20.81■□□□□ 0.92
UPF3A-209ENST00000492270 UBAP1Q9NZ09 502 aa20.81■□□□□ 0.92
UPF3A-209ENST00000492270 AP4S1Q9Y587 144 aa20.81■□□□□ 0.92
UPF3A-209ENST00000492270 WNK2Q9Y3S1 2297 aa20.81■□□□□ 0.92
UPF3A-209ENST00000492270 A0A1B0GWJ7 208 aa20.8■□□□□ 0.92
UPF3A-209ENST00000492270 MITFO75030 526 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-209ENST00000492270 AMIGO2Q86SJ2 522 aa20.8■□□□□ 0.92
UPF3A-209ENST00000492270 PEG10Q86TG7 708 aaKnown RBP20.8■□□□□ 0.92
UPF3A-209ENST00000492270 DNAJC9Q8WXX5 260 aa20.8■□□□□ 0.92
UPF3A-209ENST00000492270 PLEKHA8Q96JA3 519 aa20.8■□□□□ 0.92
UPF3A-209ENST00000492270 TMEM100Q9NV29 134 aa20.8■□□□□ 0.92
UPF3A-209ENST00000492270 PRODHO43272 600 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 PLPP2O43688 288 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 SBK2P0C263 348 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 SLC2A5P22732 501 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 FASP25445 335 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 NAA10P41227 235 aaPredicted RBP20.79■□□□□ 0.92
UPF3A-209ENST00000492270 CX3CR1P49238 355 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 ZMYND11Q15326 602 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 ASRGL1Q7L266 308 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 CXXC5Q7LFL8 322 aaKnown RBP20.79■□□□□ 0.92
UPF3A-209ENST00000492270 PARP8Q8N3A8 854 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 RNF133Q8WVZ7 376 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 SPRYD4Q8WW59 207 aaPredicted RBP20.79■□□□□ 0.92
UPF3A-209ENST00000492270 LRTOMTQ8WZ04 291 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 DUS3LQ96G46 650 aaKnown RBP20.79■□□□□ 0.92
UPF3A-209ENST00000492270 REPIN1Q9BWE0 567 aaKnown RBP20.79■□□□□ 0.92
UPF3A-209ENST00000492270 TVP23BQ9NYZ1 205 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 DNAJC27Q9NZQ0 273 aa20.79■□□□□ 0.92
UPF3A-209ENST00000492270 CD300LBA8K4G0 201 aa20.78■□□□□ 0.92
UPF3A-209ENST00000492270 HSD11B1P28845 292 aa20.78■□□□□ 0.92
UPF3A-209ENST00000492270 SRP9P49458 86 aaKnown RBP20.78■□□□□ 0.92
UPF3A-209ENST00000492270 GRB2P62993 217 aaKnown RBP20.78■□□□□ 0.92
UPF3A-209ENST00000492270 SHFQ7M4L6 423 aa20.78■□□□□ 0.92
UPF3A-209ENST00000492270 MOGAT3Q86VF5 341 aa20.78■□□□□ 0.92
UPF3A-209ENST00000492270 KRT84Q9NSB2 600 aa20.78■□□□□ 0.92
UPF3A-209ENST00000492270 KLHDC2Q9Y2U9 406 aa20.78■□□□□ 0.92
UPF3A-209ENST00000492270 G3V2T6 193 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 TMEM178BH3BS89 294 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 M0R129 80 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 TBX1O43435 398 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 CIB2O75838 187 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 CYB5R3P00387 301 aaPredicted RBP20.77■□□□□ 0.92
UPF3A-209ENST00000492270 CA6P23280 308 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 SLC15A1P46059 708 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 RPS7P62081 194 aaKnown RBP20.77■□□□□ 0.92
UPF3A-209ENST00000492270 BTG1P62324 171 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 MAB21L1Q13394 359 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 APOFQ13790 326 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 PTGES3Q15185 160 aaKnown RBP20.77■□□□□ 0.92
UPF3A-209ENST00000492270 SNAPC1Q16533 368 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 OTOSQ8NHW6 89 aa20.77■□□□□ 0.92
UPF3A-209ENST00000492270 DVL3Q92997 716 aaPredicted RBP20.77■□□□□ 0.92
UPF3A-209ENST00000492270 COL6A5A8TX70 2615 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 TRAV20A0A0B4J274 112 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 GGT3PA6NGU5 568 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 ZNF205O95201 554 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 ANXA2P07355 339 aaKnown RBP20.76■□□□□ 0.91
UPF3A-209ENST00000492270 PCMT1P22061 227 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 EPHA2P29317 976 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 PMELP40967 661 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 OPRL1P41146 370 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 SLC35D3Q5M8T2 416 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 TEX12Q9BXU0 123 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 GABARAPL1Q9H0R8 117 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 SEMA6AQ9H2E6 1030 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 TOR3AQ9H497 397 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 G6PC2Q9NQR9 355 aa20.76■□□□□ 0.91
UPF3A-209ENST00000492270 PRKYO43930 277 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 LYNP07948 512 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 ANPEPP15144 967 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 SRP14P37108 136 aaKnown RBP20.75■□□□□ 0.91
UPF3A-209ENST00000492270 ZNF121P58317 390 aaPredicted RBP20.75■□□□□ 0.91
UPF3A-209ENST00000492270 ESRRGP62508 458 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 PRAMEF6Q5VXH4 476 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 KDM4DQ6B0I6 523 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 FAHD2BQ6P2I3 314 aaPredicted RBP20.75■□□□□ 0.91
UPF3A-209ENST00000492270 FAM57BQ71RH2 274 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 PRSS45Q7RTY3 260 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 LRRC28Q86X40 367 aaPredicted RBP20.75■□□□□ 0.91
UPF3A-209ENST00000492270 OR56B2PQ8NGI1 322 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 THEM6Q8WUY1 208 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 FAHD2AQ96GK7 314 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 ADAT1Q9BUB4 502 aaKnown RBP20.75■□□□□ 0.91
UPF3A-209ENST00000492270 BRD7Q9NPI1 651 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 ZNF319Q9P2F9 582 aa20.75■□□□□ 0.91
UPF3A-209ENST00000492270 DOCK11Q5JSL3 2073 aa20.74■□□□□ 0.91
UPF3A-209ENST00000492270 CCDC182A6NF36 153 aa20.74■□□□□ 0.91
UPF3A-209ENST00000492270 PHF1O43189 567 aaPredicted RBP20.74■□□□□ 0.91
UPF3A-209ENST00000492270 XRCC2O43543 280 aa20.74■□□□□ 0.91
UPF3A-209ENST00000492270 H2BFMP0C1H6 154 aa20.74■□□□□ 0.91
UPF3A-209ENST00000492270 HCCSP53701 268 aa20.74■□□□□ 0.91
UPF3A-209ENST00000492270 SEC61A1P61619 476 aaKnown RBP20.74■□□□□ 0.91
UPF3A-209ENST00000492270 LCN2P80188 198 aa20.74■□□□□ 0.91
UPF3A-209ENST00000492270 SRSF2Q01130 221 aaKnown RBP20.74■□□□□ 0.91
UPF3A-209ENST00000492270 OR8G1Q15617 311 aa20.74■□□□□ 0.91
UPF3A-209ENST00000492270 BCDIN3DQ7Z5W3 292 aaKnown RBP20.74■□□□□ 0.91
UPF3A-209ENST00000492270 ZDHHC13Q8IUH4 622 aa20.74■□□□□ 0.91
UPF3A-209ENST00000492270 SPSB4Q96A44 273 aa20.74■□□□□ 0.91
UPF3A-209ENST00000492270 PCDHB10Q9UN67 800 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms