RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-206	ENST00000489142	EIF2B1	Q14232	305 aa	Known RBP	11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	FLOT2	Q14254	428 aa		11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	TMEM155	Q4W5P6	130 aa		11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	LINC01590	Q5TEZ4	76 aa		11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	SLC27A4	Q6P1M0	643 aa		11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	ERI1	Q8IV48	349 aa	Known RBP	11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	AQP12A	Q8IXF9	295 aa		11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	OR6N2	Q8NGY6	317 aa		11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	C22orf15	Q8WYQ4	148 aa		11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	PATZ1	Q9HBE1	687 aa	Known RBP	11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	CMC2	Q9NRP2	79 aa		11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	UFSP2	Q9NUQ7	469 aa		11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	OPN4	Q9UHM6	478 aa		11.77	□□□□□ -0.53
VTI1A-206	ENST00000489142	GGT3P	A6NGU5	568 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	CD300LB	A8K4G0	201 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	TRAPPC2L	H3BP13	241 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	TBX1	O43435	398 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	FKBP6	O75344	327 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	FOXH1	O75593	365 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	GRK5	P34947	590 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	CBX1	P83916	185 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	GINS1	Q14691	196 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	OR8G1	Q15617	311 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	MPPED2	Q15777	294 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	PCK2	Q16822	640 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	DNAL1	Q4LDG9	190 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	DRAM2	Q6UX65	266 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	CD300LD	Q6UXZ3	194 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	DPY19L4	Q7Z388	723 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	C1QL2	Q7Z5L3	287 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	ZMYND19	Q96E35	227 aa	Predicted RBP	11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	AMELY	Q99218	206 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	SLC6A7	Q99884	636 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	ADAT1	Q9BUB4	502 aa	Known RBP	11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	OR51V1	Q9H2C8	321 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	DNAJC27	Q9NZQ0	273 aa		11.76	□□□□□ -0.53
VTI1A-206	ENST00000489142	DOCK11	Q5JSL3	2073 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	FBN3	Q75N90	2809 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	ZNF878	C9JN71	531 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142		F5H0A9	414 aa	Predicted RBP	11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142		J3QLI3	93 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	FAM20B	O75063	409 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	GSTT1	P30711	240 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	OTX1	P32242	354 aa	Predicted RBP	11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	CX3CR1	P49238	355 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	TMEM236	Q5W0B7	351 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	PLBD1	Q6P4A8	553 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	BOLL	Q8N9W6	283 aa	Known RBP	11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	DEFB108B	Q8NET1	73 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	SEMA6D	Q8NFY4	1073 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	POP5	Q969H6	163 aa	Known RBP	11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	INTS14	Q96SY0	518 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	KCNJ15	Q99712	375 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	TMEM246	Q9BRR3	403 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	TMEM165	Q9HC07	324 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	BRD7	Q9NPI1	651 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142	POMP	Q9Y244	141 aa		11.75	□□□□□ -0.53
VTI1A-206	ENST00000489142		A0A1B0GWJ7	208 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	TCRBV3S1	A0A5B6	114 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	ARRDC5	A6NEK1	342 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	SELENOF	O60613	162 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	DNAJC8	O75937	253 aa	Predicted RBP	11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	ANXA2	P07355	339 aa	Known RBP	11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	RPS2	P15880	293 aa	Known RBP	11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	HSD11B1	P28845	292 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	CD200	P41217	278 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	RAD23A	P54725	363 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	GFOD2	Q3B7J2	385 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	KLHL12	Q53G59	568 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	ESCO2	Q56NI9	601 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	TEX30	Q5JUR7	227 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	MUC20	Q8N307	709 aa	Predicted RBP	11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	BBS1	Q8NFJ9	593 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	OR56B2P	Q8NGI1	322 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	NANP	Q8TBE9	248 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	ABHD6	Q9BV23	337 aa		11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	CADM1	Q9BY67	442 aa	Known RBP	11.74	□□□□□ -0.53
VTI1A-206	ENST00000489142	PPIAL4E	A0A075B759	164 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	LRRC30	A6NM36	301 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	PRR23D1	E9PI22	279 aa	Predicted RBP	11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	PPIAL4D	F5H284	164 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	TIPRL	O75663	272 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	GLCE	O94923	617 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	WNT2	P09544	360 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	PRR23D2	P0DMB1	279 aa	Predicted RBP	11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	PPIAL4F	P0DN26	164 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	OSM	P13725	252 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	PAICS	P22234	425 aa	Known RBP	11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	GATA3	P23771	443 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	NAA10	P41227	235 aa	Predicted RBP	11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	ZNF121	P58317	390 aa	Predicted RBP	11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	GRB2	P62993	217 aa	Known RBP	11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	ZNF154	Q13106	437 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	GK3P	Q14409	553 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	SFRP4	Q6FHJ7	346 aa	Predicted RBP	11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	LYPD2	Q6UXB3	125 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	FAM57B	Q71RH2	274 aa		11.73	□□□□□ -0.53
VTI1A-206	ENST00000489142	KLB	Q86Z14	1044 aa		11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms