RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 CENPKQ9BS16 269 aa1.69□□□□□ -2.14
PTPN4-212ENST00000488896 TMEM243Q9BU79 118 aa1.69□□□□□ -2.14
PTPN4-212ENST00000488896 PKIBQ9C010 78 aa1.69□□□□□ -2.14
PTPN4-212ENST00000488896 MYOZ1Q9NP98 299 aaPredicted RBP1.69□□□□□ -2.14
PTPN4-212ENST00000488896 PARP11Q9NR21 331 aa1.69□□□□□ -2.14
PTPN4-212ENST00000488896 LGALS13Q9UHV8 139 aa1.69□□□□□ -2.14
PTPN4-212ENST00000488896 USP47Q96K76 1375 aa1.69□□□□□ -2.14
PTPN4-212ENST00000488896 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.69□□□□□ -2.14
PTPN4-212ENST00000488896 ADGRA3Q8IWK6 1321 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 SYNJ2BP-COX16A0A087WUM0 186 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 XKRY2A2RUG3 117 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 OR2AG2A6NM03 316 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 AIM2O14862 343 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 EIF3HO15372 352 aaKnown RBP eCLIP1.68□□□□□ -2.14
PTPN4-212ENST00000488896 RNF13O43567 381 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 ARG1P05089 322 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 ZNF24P17028 368 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 PBLDP30039 288 aaPredicted RBP1.68□□□□□ -2.14
PTPN4-212ENST00000488896 ATP5IP56385 69 aaPredicted RBP1.68□□□□□ -2.14
PTPN4-212ENST00000488896 TAS2R46P59540 309 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 SELENBP1Q13228 472 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 SLC25A35Q3KQZ1 300 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 C9orf135Q5VTT2 229 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 UBE2UQ5VVX9 321 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 CDH26Q8IXH8 852 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 IQCKQ8N0W5 287 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 RAB3IL1Q8TBN0 382 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 CAPSLQ8WWF8 208 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 GHSRQ92847 366 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 TPD52L3Q96J77 140 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 MED4Q9NPJ6 270 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 TAS2R1Q9NYW7 299 aa1.68□□□□□ -2.14
PTPN4-212ENST00000488896 UXTQ9UBK9 157 aaPredicted RBP1.68□□□□□ -2.14
PTPN4-212ENST00000488896 TRIP11Q15643 1979 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 GOLGA8OA6NCC3 632 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 NCBP2LA6PVI3 153 aaKnown RBP1.67□□□□□ -2.14
PTPN4-212ENST00000488896 GOLGA8NF8WBI6 632 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 SMKR1H3BMG3 65 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 C3orf84H3BNL1 204 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 SERPINE2P07093 398 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 INAFM2P0DMQ5 153 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 SLC1A1P43005 524 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 TNNT2P45379 298 aaPredicted RBP1.67□□□□□ -2.14
PTPN4-212ENST00000488896 SP4Q02446 784 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 LUZP6Q538Z0 58 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 REEP3Q6NUK4 255 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 TAS2R42Q7RTR8 314 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 SLC16A14Q7RTX9 510 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 ERO1BQ86YB8 467 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 FAM71AQ8IYT1 594 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 CMTM1Q8IZ96 169 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 GTPBP8Q8N3Z3 284 aaPredicted RBP1.67□□□□□ -2.14
PTPN4-212ENST00000488896 CBR4Q8N4T8 237 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 OR2Z1Q8NG97 314 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 OR10G6Q8NH81 332 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 NUBPLQ8TB37 319 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 RASD2Q96D21 266 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 ZBED3Q96IU2 234 aaPredicted RBP1.67□□□□□ -2.14
PTPN4-212ENST00000488896 NUDT9Q9BW91 350 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 ZNF492Q9P255 531 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 R4GN34 69 aa1.67□□□□□ -2.14
PTPN4-212ENST00000488896 A0A1B0GUH1 482 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 LYRM9A8MSI8 78 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 SYCE1LA8MT33 242 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 E7EQL1 145 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 H7C1H1 209 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 SIRPB1O00241 398 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 SCAMP2O15127 329 aaKnown RBP1.66□□□□□ -2.14
PTPN4-212ENST00000488896 TROVE2P10155 538 aaKnown RBP eCLIP1.66□□□□□ -2.14
PTPN4-212ENST00000488896 EIF3EP60228 445 aaKnown RBP1.66□□□□□ -2.14
PTPN4-212ENST00000488896 RAB10P61026 200 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 PNOCQ13519 176 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 ALKBH6Q3KRA9 238 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 TMEM69Q5SWH9 247 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 C22orf42Q6IC83 251 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 ZYG11AQ6WRX3 759 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 DAZ4Q86SG3 579 aaKnown RBP1.66□□□□□ -2.14
PTPN4-212ENST00000488896 NT5DC3Q86UY8 548 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 OR4A4PQ8NGN8 299 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 OR51E1Q8TCB6 317 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 ECHDC3Q96DC8 303 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 ANKRD60Q9BZ19 345 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 DAZ1Q9NQZ3 744 aaKnown RBP1.66□□□□□ -2.14
PTPN4-212ENST00000488896 PITPNC1Q9UKF7 332 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 NACADO15069 1562 aa1.66□□□□□ -2.14
PTPN4-212ENST00000488896 TRBV9A0A0B4J1U6 114 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 SMCO3A2RU48 225 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 TNFRSF11BO00300 401 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 RAD51CO43502 376 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 CLDN11O75508 207 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 CIB2O75838 187 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 AQP8O94778 261 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 IGLV2-8P01709 118 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 CT45A6P0DMU7 189 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 CT45A5P0DMU8 189 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 CT45A7P0DMV0 189 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 IL32P24001 234 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 RRM2P31350 389 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 POLR2IP36954 125 aaKnown RBP1.65□□□□□ -2.15
PTPN4-212ENST00000488896 BIKQ13323 160 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms