RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	APOC1	P02654	83 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	TF	P02787	698 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	SERPINA5	P05154	406 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	LYN	P07948	512 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	H2BFM	P0C1H6	154 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	STOM	P27105	288 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	CFP	P27918	469 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	HSD11B1	P28845	292 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	APOBEC3A	P31941	199 aa	Predicted RBP	7.5	□□□□□ -1.21
USP4-213	ENST00000488520	RAD52	P43351	418 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	MTNR1A	P48039	350 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	IDH3G	P51553	393 aa	Predicted RBP	7.5	□□□□□ -1.21
USP4-213	ENST00000488520	EFNB1	P98172	346 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	PSG4	Q00888	419 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	MEP1B	Q16820	701 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	C3orf36	Q3SXR2	165 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	PABPC1L2A	Q5JQF8	200 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	TEX30	Q5JUR7	227 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	AADACL4	Q5VUY2	407 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	SLC18B1	Q6NT16	456 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	ZNF544	Q6NX49	715 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	UGT2A3	Q6UWM9	527 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	SLC16A9	Q7RTY1	509 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	DPY19L4	Q7Z388	723 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	BCDIN3D	Q7Z5W3	292 aa	Known RBP	7.5	□□□□□ -1.21
USP4-213	ENST00000488520	KRT77	Q7Z794	578 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	LINC00346	Q8IVM7	164 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	ENTHD1	Q8IYW4	607 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	7.5	□□□□□ -1.21
USP4-213	ENST00000488520	SLC30A7	Q8NEW0	376 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	BBS1	Q8NFJ9	593 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	SLC26A10	Q8NG04	563 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	OR51G2	Q8NGK0	314 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	SPTSSA	Q969W0	71 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	NABP1	Q96AH0	204 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	EAF1	Q96JC9	268 aa	Predicted RBP	7.5	□□□□□ -1.21
USP4-213	ENST00000488520	ZNF582	Q96NG8	517 aa	Predicted RBP	7.5	□□□□□ -1.21
USP4-213	ENST00000488520	CNN2	Q99439	309 aa	Known RBP	7.5	□□□□□ -1.21
USP4-213	ENST00000488520	MNT	Q99583	582 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	ZNF184	Q99676	751 aa	Predicted RBP	7.5	□□□□□ -1.21
USP4-213	ENST00000488520	VRK1	Q99986	396 aa	Predicted RBP	7.5	□□□□□ -1.21
USP4-213	ENST00000488520	HCAR1	Q9BXC0	346 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	YIPF3	Q9GZM5	350 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	SP140L	Q9H930	580 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	WDR76	Q9H967	626 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	ELOVL3	Q9HB03	270 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	B3GNT2	Q9NY97	397 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	DNAJC27	Q9NZQ0	273 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	PKD1L1	Q8TDX9	2849 aa		7.5	□□□□□ -1.21
USP4-213	ENST00000488520	TG	P01266	2768 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	DAPL1	A0PJW8	107 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	C5orf49	A4QMS7	147 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	OR6C6	A6NF89	314 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520		M0R129	80 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	DLGAP1	O14490	977 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	DOK2	O60496	412 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	CLIC3	O95833	236 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	FADS2	O95864	444 aa	Known RBP	7.49	□□□□□ -1.21
USP4-213	ENST00000488520	SCG5	P05408	212 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	MRPL3	P09001	348 aa	Known RBP	7.49	□□□□□ -1.21
USP4-213	ENST00000488520	TACSTD2	P09758	323 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	OR2T7	P0C7T2	308 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	COX5B	P10606	129 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	SRP14	P37108	136 aa	Known RBP	7.49	□□□□□ -1.21
USP4-213	ENST00000488520	NAA10	P41227	235 aa	Predicted RBP	7.49	□□□□□ -1.21
USP4-213	ENST00000488520	HTR5A	P47898	357 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	TPTE	P56180	551 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	SELENOV	P59797	346 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	ENDOG	Q14249	297 aa	Known RBP	7.49	□□□□□ -1.21
USP4-213	ENST00000488520	MAD2L1BP	Q15013	274 aa	Predicted RBP	7.49	□□□□□ -1.21
USP4-213	ENST00000488520	ELFN2	Q5R3F8	820 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	ZNF774	Q6NX45	483 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	CORO6	Q6QEF8	472 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	NLRC3	Q7RTR2	1065 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	DCXR	Q7Z4W1	244 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	SLC35F2	Q8IXU6	374 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	RFLNB	Q8N5W9	214 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	BPIFB6	Q8NFQ5	453 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	OR4F15	Q8NGB8	312 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	OR5L1	Q8NGL2	311 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	OR2T27	Q8NH04	317 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	OR1F12	Q8NHA8	337 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	AKR7L	Q8NHP1	331 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	SNX33	Q8WV41	574 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	ZNRF4	Q8WWF5	429 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	IPCEF1	Q8WWN9	437 aa	Predicted RBP	7.49	□□□□□ -1.21
USP4-213	ENST00000488520	ASB17	Q8WXJ9	295 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	RNFT2	Q96EX2	444 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	DCLRE1C	Q96SD1	692 aa	Known RBP	7.49	□□□□□ -1.21
USP4-213	ENST00000488520	MRO	Q9BYG7	248 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	OR2H1	Q9GZK4	316 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	BPESC1	Q9GZL8	116 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	HDHD2	Q9H0R4	259 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	MRPL22	Q9NWU5	206 aa	Known RBP	7.49	□□□□□ -1.21
USP4-213	ENST00000488520	HAO2	Q9NYQ3	351 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	CYB5R1	Q9UHQ9	305 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	TPRKB	Q9Y3C4	175 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	GRIP1	Q9Y3R0	1128 aa		7.49	□□□□□ -1.21
USP4-213	ENST00000488520	IGHV1-18	A0A0C4DH31	117 aa		7.48	□□□□□ -1.21
USP4-213	ENST00000488520	LOC390937	A0A1W2PQ73	354 aa		7.48	□□□□□ -1.21

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms