RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 IFT27Q9BW83 186 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CDADC1Q9BWV3 514 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SLC22A4Q9H015 551 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SLITRK2Q9H156 845 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 FN3KQ9H479 309 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 UNKLQ9H9P5 680 aaKnown RBP10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ADA2Q9NZK5 511 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MAGEL2Q9UJ55 1249 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MMP24Q9Y5R2 645 aa10.19□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TGP01266 2768 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CD300LBA8K4G0 201 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 M0R135 149 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ARPC2O15144 300 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 KCNAB3O43448 404 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 GMDSO60547 372 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 GMNNO75496 209 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 FCN3O75636 299 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 LHBP01229 141 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 LCATP04180 440 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MMP9P14780 707 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 RRM2P31350 389 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MSX2P35548 267 aaPredicted RBP10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TPTEP56180 551 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 HOXA4Q00056 320 aaPredicted RBP10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SNAI3Q3KNW1 292 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TEX30Q5JUR7 227 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SLC35F1Q5T1Q4 408 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PGAP1Q75T13 922 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 NLRC3Q7RTR2 1065 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PGAM4Q8N0Y7 254 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CCDC197Q8NCU1 140 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OR2AJ1Q8NGZ0 328 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TAF15Q92804 592 aaKnown RBP eCLIP10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ZNF799Q96GE5 643 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 BTBD10Q9BSF8 475 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 NMNAT2Q9BZQ4 307 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CTSZQ9UBR2 303 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CLN8Q9UBY8 286 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TAGLN3Q9UI15 199 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 LYVE1Q9Y5Y7 322 aa10.18□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 IGHV3OR16-10A0A075B7F0 116 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TRAV40A0A0B4J280 105 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 KRT36O76013 467 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 FABP3P05413 133 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CA6P23280 308 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 NOS3P29474 1203 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PYCR1P32322 319 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 IFNGR2P38484 337 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MAGEA2P43356 314 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 NPY4RP50391 375 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MALLQ13021 153 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 DEFB112Q30KQ8 113 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SPATS1Q496A3 300 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SAMD4BQ5PRF9 694 aaKnown RBP10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 PRAMEF6Q5VXH4 476 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 LYPD4Q6UWN0 246 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 LNX2Q8N448 690 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 C19orf18Q8NEA5 215 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OR4C15Q8NGM1 316 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OR8D4Q8NGM9 314 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SPSB4Q96A44 273 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 NSMCE2Q96MF7 247 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CDRT15Q96T59 188 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TRIM15Q9C019 465 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 EGLN3Q9H6Z9 239 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MRPL15Q9P015 296 aaKnown RBP10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 RNF7Q9UBF6 113 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TMCC3Q9ULS5 477 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CDH10Q9Y6N8 788 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 V9GYQ6 96 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 NOTCH1P46531 2555 aa10.17□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MDFIC2A0A1B0GVS7 189 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SRRM5B3KS81 715 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 LGALS8O00214 317 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 GASTP01350 101 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 LIPFP07098 398 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 RPS27P42677 84 aaKnown RBP10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 FGF12P61328 243 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OCLNQ16625 522 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 C11orf91Q3C1V1 193 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 GLYATL3Q5SZD4 288 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 RPL13AP3Q6NVV1 102 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 DRAM2Q6UX65 266 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 C16orf89Q6UX73 402 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 BRD3OSQ6XYD6 125 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 Q6YL49 198 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 RASSF6Q6ZTQ3 369 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 ZDHHC21Q8IVQ6 265 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 C11orf53Q8IXP5 236 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 CYB561A3Q8NBI2 242 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OR11L1Q8NGX0 322 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 OR2AE1Q8NHA4 323 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SPRYD4Q8WW59 207 aaPredicted RBP10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 SPTSSAQ969W0 71 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 MCUR1Q96AQ8 359 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TMIGD2Q96BF3 282 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 TBX15Q96SF7 602 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 FN3KRPQ9HA64 309 aa10.16□□□□□ -0.78
MSH5-SAPCD1-205ENST00000476085 UFSP2Q9NUQ7 469 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms