RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KLHL36Q8N4N3 616 aa11.81□□□□□ -0.52
UPF3A-204ENST00000475218 OR2AE1Q8NHA4 323 aa11.81□□□□□ -0.52
UPF3A-204ENST00000475218 REEP1Q9H902 201 aa11.81□□□□□ -0.52
UPF3A-204ENST00000475218 MED20Q9H944 212 aa11.81□□□□□ -0.52
UPF3A-204ENST00000475218 TMEM100Q9NV29 134 aa11.81□□□□□ -0.52
UPF3A-204ENST00000475218 PCDHB10Q9UN67 800 aa11.81□□□□□ -0.52
UPF3A-204ENST00000475218 INSIG2Q9Y5U4 225 aa11.81□□□□□ -0.52
UPF3A-204ENST00000475218 ZNF823P16415 610 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 SRP9P49458 86 aaKnown RBP11.8□□□□□ -0.52
UPF3A-204ENST00000475218 TPTEP56180 551 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 ZNF154Q13106 437 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 RIPK1Q13546 671 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 ZNF181Q2M3W8 571 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 FAM98BQ52LJ0 330 aaKnown RBP11.8□□□□□ -0.52
UPF3A-204ENST00000475218 TEX30Q5JUR7 227 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 GLYATL3Q5SZD4 288 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 IQCF1Q8N6M8 205 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 OR10G2Q8NGC3 310 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 NANPQ8TBE9 248 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 C22orf15Q8WYQ4 148 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 FEVQ99581 238 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 TMEM246Q9BRR3 403 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 CHID1Q9BWS9 393 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 C1orf21Q9H246 121 aa11.8□□□□□ -0.52
UPF3A-204ENST00000475218 FAM183AA6NL82 134 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 CD300LBA8K4G0 201 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 FSTL3O95633 263 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 SPARCP09486 303 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 RAP2AP10114 183 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 SLC2A1P11166 492 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 CD200P41217 278 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 ENTPD1P49961 510 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 PRAMEF6Q5VXH4 476 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 PGAP1Q75T13 922 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 ZDHHC22Q8N966 263 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 OR2T33Q8NG76 320 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 Q8TCH9 128 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 ZNF418Q8TF45 676 aaPredicted RBP11.79□□□□□ -0.52
UPF3A-204ENST00000475218 ZFAND2BQ8WV99 257 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 CANT1Q8WVQ1 401 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 SLAMF6Q96DU3 332 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 AMELYQ99218 206 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 CMC2Q9NRP2 79 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 IFNL4K9M1U5 179 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 ZNF593O00488 134 aaPredicted RBP11.79□□□□□ -0.52
UPF3A-204ENST00000475218 FAM20BO75063 409 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 PTBP3O95758 552 aaKnown RBP11.79□□□□□ -0.52
UPF3A-204ENST00000475218 CA6P23280 308 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 CD80P33681 288 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 PRKXP51817 358 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 ZNF404Q494X3 552 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 DRAM2Q6UX65 266 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 LYPD2Q6UXB3 125 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 KLBQ86Z14 1044 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 HS3ST5Q8IZT8 346 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 CELF2-AS1Q8N7Q2 184 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 C19orf18Q8NEA5 215 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 THTPAQ9BU02 230 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 BAIAP2Q9UQB8 552 aa11.79□□□□□ -0.52
UPF3A-204ENST00000475218 DHRS12A0PJE2 317 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 FMO3P31513 532 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 PAX8Q06710 450 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 MALLQ13021 153 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 ZNF841Q6ZN19 808 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 SPATC1Q76KD6 591 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 PRSS45Q7RTY3 260 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 MRPL21Q7Z2W9 205 aaKnown RBP11.78□□□□□ -0.52
UPF3A-204ENST00000475218 BCL6BQ8N143 479 aaPredicted RBP11.78□□□□□ -0.52
UPF3A-204ENST00000475218 MUC20Q8N307 709 aaPredicted RBP11.78□□□□□ -0.52
UPF3A-204ENST00000475218 TEX29Q8N6K0 151 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 FAM216AQ8WUB2 273 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 SPTSSAQ969W0 71 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 KCNJ15Q99712 375 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 MARCH7Q9H992 704 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 ZNF319Q9P2F9 582 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 ZNF69Q9UC07 566 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 LRCH1Q9Y2L9 728 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 SOX21Q9Y651 276 aaPredicted RBP11.78□□□□□ -0.52
UPF3A-204ENST00000475218 DOCK11Q5JSL3 2073 aa11.78□□□□□ -0.52
UPF3A-204ENST00000475218 ARRDC5A6NEK1 342 aa11.77□□□□□ -0.52
UPF3A-204ENST00000475218 FCN3O75636 299 aa11.77□□□□□ -0.52
UPF3A-204ENST00000475218 TIGD4Q8IY51 512 aa11.77□□□□□ -0.52
UPF3A-204ENST00000475218 OR6K6Q8NGW6 343 aa11.77□□□□□ -0.52
UPF3A-204ENST00000475218 GIPC3Q8TF64 312 aa11.77□□□□□ -0.52
UPF3A-204ENST00000475218 POP5Q969H6 163 aaKnown RBP11.77□□□□□ -0.52
UPF3A-204ENST00000475218 SPSB4Q96A44 273 aa11.77□□□□□ -0.52
UPF3A-204ENST00000475218 SLC7A6OSQ96CW6 309 aaPredicted RBP11.77□□□□□ -0.52
UPF3A-204ENST00000475218 C1orf147Q96MC9 270 aaPredicted RBP11.77□□□□□ -0.52
UPF3A-204ENST00000475218 ZNF48Q96MX3 618 aaPredicted RBP11.77□□□□□ -0.52
UPF3A-204ENST00000475218 COPS4Q9BT78 406 aa11.77□□□□□ -0.52
UPF3A-204ENST00000475218 PPP1R3EQ9H7J1 279 aa11.77□□□□□ -0.52
UPF3A-204ENST00000475218 CENPMQ9NSP4 180 aa11.77□□□□□ -0.52
UPF3A-204ENST00000475218 UFSP2Q9NUQ7 469 aa11.77□□□□□ -0.52
UPF3A-204ENST00000475218 AUP1Q9Y679 476 aa11.77□□□□□ -0.52
UPF3A-204ENST00000475218 TNFRSF13BO14836 293 aaPredicted RBP11.77□□□□□ -0.53
UPF3A-204ENST00000475218 CST1P01037 141 aa11.77□□□□□ -0.53
UPF3A-204ENST00000475218 RPS2P15880 293 aaKnown RBP11.77□□□□□ -0.53
UPF3A-204ENST00000475218 GRK5P34947 590 aa11.77□□□□□ -0.53
UPF3A-204ENST00000475218 SCGB2A2Q13296 93 aa11.77□□□□□ -0.53
UPF3A-204ENST00000475218 KLHL12Q53G59 568 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms