RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 GRIP1Q9Y3R0 1128 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 F5H5K5 113 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 J3QW42 95 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 RRP9O43818 475 aaKnown RBP10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 RGS9O75916 674 aaPredicted RBP10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 NGFP01138 241 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 LYNP07948 512 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 ACSM4P0C7M7 580 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 GABRB1P18505 474 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 GIFP27352 417 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 HTR1FP30939 366 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 OTX1P32242 354 aaPredicted RBP10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 RGS6P49758 472 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 CHN2P52757 468 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 DVL1P1P54792 670 aaPredicted RBP10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 ERVS71-1P61550 626 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 POU4F2Q12837 409 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 TMED1Q13445 227 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 OCLNQ16625 522 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 RSPO1Q2MKA7 263 aaPredicted RBP10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 TTC23Q5W5X9 447 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 RHOUQ7L0Q8 258 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 DHRSXQ8N5I4 330 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 RNF133Q8WVZ7 376 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 NRG4Q8WWG1 115 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 JMJD8Q96S16 334 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 AMELYQ99218 206 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 APOL4Q9BPW4 351 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 COPS4Q9BT78 406 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 MRPL37Q9BZE1 423 aaKnown RBP10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 ADGRL4Q9HBW9 690 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 DYNLRB1Q9NP97 96 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 CENPMQ9NSP4 180 aa10.14□□□□□ -0.79
SQSTM1-206ENST00000466342 H3BSA7 217 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 M0R135 149 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 ATP6V1G2O95670 118 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 ADRA2AP08913 450 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 DAOP14920 347 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 ZNF250P15622 560 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 ALOX5APP20292 161 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 TUBG1P23258 451 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 IL2RGP31785 369 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 SLC15A1P46059 708 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 CDH15P55291 814 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 TPTEP56180 551 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 PPP1CBP62140 327 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 GRB2P62993 217 aaKnown RBP10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 ADARB1P78563 741 aaKnown RBP10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 TAF13Q15543 124 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 ZNF718Q3SXZ3 478 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 ZNF691Q5VV52 312 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 COLCA1Q6ZS62 124 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 SPATC1Q76KD6 591 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 ZCCHC24Q8N2G6 241 aaKnown RBP10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 ZNF786Q8N393 782 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 RHOXF1Q8NHV9 184 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 SLC25A40Q8TBP6 338 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 UBASH3BQ8TF42 649 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 THEM6Q8WUY1 208 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 CYGBQ8WWM9 190 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 SPTSSAQ969W0 71 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 APOBEC3DQ96AK3 386 aaPredicted RBP10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 ZNF799Q96GE5 643 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 MARS2Q96GW9 593 aaKnown RBP10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 COG8Q96MW5 612 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 MNTQ99583 582 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 KCNJ15Q99712 375 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 ADI1Q9BV57 179 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 C1QTNF5Q9BXJ0 243 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 TUBG2Q9NRH3 451 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 LAMP5Q9UJQ1 280 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 FZR1Q9UM11 496 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 KLHDC2Q9Y2U9 406 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 RRP15Q9Y3B9 282 aaKnown RBP10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 TMEM14AQ9Y6G1 99 aa10.13□□□□□ -0.79
SQSTM1-206ENST00000466342 IGLV3-9A0A075B6K5 115 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 SNTNA6NMZ2 147 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 H0YAE9 185 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 H0YJX3 145 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 M0R233 179 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 LILRA1O75019 489 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 ENTPD6O75354 484 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 TACSTD2P09758 323 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 SBK2P0C263 348 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 HSD11B1P28845 292 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 CAPGP40121 348 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 OPRL1P41146 370 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 HCCSP53701 268 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 KLF3P57682 345 aaPredicted RBP10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 SELENOVP59797 346 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 FOXL1Q12952 345 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 IL18R1Q13478 541 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 SPATA46Q5T0L3 261 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 MBNL2Q5VZF2 373 aaKnown RBP10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 KCTD18Q6PI47 426 aaPredicted RBP10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 DRAM2Q6UX65 266 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 LRP11Q86VZ4 500 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 SLC35F2Q8IXU6 374 aa10.12□□□□□ -0.79
SQSTM1-206ENST00000466342 SETD9Q8NE22 299 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms