RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 BRD7Q9NPI1 651 aa16.93■□□□□ 0.3
COL9A3-204ENST00000463487 NOP16Q9Y3C1 178 aaKnown RBP16.93■□□□□ 0.3
COL9A3-204ENST00000463487 TMEM269A0A1B0GVZ9 245 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 PSMD9O00233 223 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 TPD52L2O43399 206 aaKnown RBP16.92■□□□□ 0.3
COL9A3-204ENST00000463487 SSX4O60224 188 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 SULT1C4O75897 302 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 NAT2P11245 290 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 AQP4P55087 323 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 ACTA2P62736 377 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 ACTG2P63267 376 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 GK2Q14410 553 aaPredicted RBP16.92■□□□□ 0.3
COL9A3-204ENST00000463487 HLXQ14774 488 aaPredicted RBP16.92■□□□□ 0.3
COL9A3-204ENST00000463487 SNCBQ16143 134 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 FAM209AQ5JX71 171 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 SPRYD4Q8WW59 207 aaPredicted RBP16.92■□□□□ 0.3
COL9A3-204ENST00000463487 TFAP2CQ92754 450 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 EGLN1Q9GZT9 426 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 INPP5EQ9NRR6 644 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 DECR2Q9NUI1 292 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 NKIRAS2Q9NYR9 191 aa16.92■□□□□ 0.3
COL9A3-204ENST00000463487 EXOGQ9Y2C4 368 aaKnown RBP16.92■□□□□ 0.3
COL9A3-204ENST00000463487 GGT3PA6NGU5 568 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 IQCF6A8MYZ5 107 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 TACSTD2P09758 323 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 VHLP40337 213 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 MMP15P51511 669 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 ISL1P61371 349 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 MED21Q13503 144 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 GLYATL3Q5SZD4 288 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 OR2T2Q6IF00 324 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 SPNS3Q6ZMD2 512 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 KCTD20Q7Z5Y7 419 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 THAP5Q7Z6K1 395 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 YIPF7Q8N8F6 280 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 CNIH3Q8TBE1 160 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 APH1BQ8WW43 257 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 LGALS12Q96DT0 336 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 AASSQ9UDR5 926 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 CREBBPQ92793 2442 aa16.91■□□□□ 0.3
COL9A3-204ENST00000463487 METTL15A6NJ78 407 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 LOC110117498-PIK3R3F6TDL0 507 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 NDUFS7O75251 213 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 WBP4O75554 376 aaKnown RBP16.9■□□□□ 0.3
COL9A3-204ENST00000463487 DDOSTP39656 456 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 MMP16P51512 607 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 ZNF92Q03936 586 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 TESK1Q15569 626 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 CLEC12BQ2HXU8 276 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 GFOD2Q3B7J2 385 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 IZUMO2Q6UXV1 221 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 FTMTQ8N4E7 242 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 RFLNBQ8N5W9 214 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 OR8G5Q8NG78 346 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 OR13G1Q8NGZ3 307 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 OR2AE1Q8NHA4 323 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 ITFG2Q969R8 447 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 REEP6Q96HR9 211 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 SLC22A4Q9H015 551 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 AMBNQ9NP70 447 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 MRPS18AQ9NVS2 196 aaKnown RBP16.9■□□□□ 0.3
COL9A3-204ENST00000463487 GTF2A1LQ9UNN4 478 aa16.9■□□□□ 0.3
COL9A3-204ENST00000463487 SPRY3O43610 288 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 ADH4P08319 380 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 GNAO1P09471 354 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 PDLIM4P50479 330 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 C6orf52Q5T4I8 152 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 PRSS45Q7RTY3 260 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 COMMD2Q86X83 199 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 EGFL6Q8IUX8 553 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 OR5AS1Q8N127 324 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 ZCCHC24Q8N2G6 241 aaKnown RBP16.89■□□□□ 0.29
COL9A3-204ENST00000463487 BHLHE23Q8NDY6 225 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 SPSB4Q96A44 273 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 RHNO1Q9BSD3 238 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 REPIN1Q9BWE0 567 aaKnown RBP16.89■□□□□ 0.29
COL9A3-204ENST00000463487 FAM206AQ9NX38 181 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 GNG8Q9UK08 70 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 SNX5Q9Y5X3 404 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 R4GMQ9 66 aa16.89■□□□□ 0.29
COL9A3-204ENST00000463487 DAOP14920 347 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 CSNK2BP67870 215 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 CDK5R2Q13319 367 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 SMN1Q16637 294 aaKnown RBP16.88■□□□□ 0.29
COL9A3-204ENST00000463487 BCL2L15Q5TBC7 163 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 SSX6Q7RTT6 188 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 OR2Z1Q8NG97 314 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 OR8B12Q8NGG6 310 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 UBASH3BQ8TF42 649 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 FAM168AQ92567 244 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 Q96MF0 132 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 PBOV1Q9GZY1 135 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 SAP30LQ9HAJ7 183 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 MSL2Q9HCI7 577 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 TMEM100Q9NV29 134 aa16.88■□□□□ 0.29
COL9A3-204ENST00000463487 CHCHD3Q9NX63 227 aaKnown RBP16.88■□□□□ 0.29
COL9A3-204ENST00000463487 NUFIP1Q9UHK0 495 aaKnown RBP16.88■□□□□ 0.29
COL9A3-204ENST00000463487 MRM2Q9UI43 246 aaKnown RBP16.88■□□□□ 0.29
COL9A3-204ENST00000463487 PRRC2AP48634 2157 aaKnown RBP16.87■□□□□ 0.29
COL9A3-204ENST00000463487 MYO9AB2RTY4 2548 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms