RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	MT-ND4	P03905	459 aa		10.5	□□□□□ -0.73
RBM39-223	ENST00000463004	GAA	P10253	952 aa		10.5	□□□□□ -0.73
RBM39-223	ENST00000463004	SLC2A1	P11166	492 aa		10.5	□□□□□ -0.73
RBM39-223	ENST00000463004	MMP15	P51511	669 aa		10.5	□□□□□ -0.73
RBM39-223	ENST00000463004	IDH3G	P51553	393 aa	Predicted RBP	10.5	□□□□□ -0.73
RBM39-223	ENST00000463004	WDR38	Q5JTN6	314 aa		10.5	□□□□□ -0.73
RBM39-223	ENST00000463004	TFAP2E	Q6VUC0	442 aa		10.5	□□□□□ -0.73
RBM39-223	ENST00000463004	SMAP2	Q8WU79	429 aa	Predicted RBP	10.5	□□□□□ -0.73
RBM39-223	ENST00000463004	TOMM40L	Q969M1	308 aa		10.5	□□□□□ -0.73
RBM39-223	ENST00000463004	MYEF2	Q9P2K5	600 aa	Known RBP	10.5	□□□□□ -0.73
RBM39-223	ENST00000463004	TERT	O14746	1132 aa	Known RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	TBX6	O95947	436 aa	Predicted RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	GSK3A	P49840	483 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	OXA1L	Q15070	435 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	SSX1	Q16384	188 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	CD276	Q5ZPR3	534 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	B3GNTL1	Q67FW5	361 aa	Predicted RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	MTFR2	Q6P444	385 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	OR8H3	Q8N146	312 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	ZBTB44	Q8NCP5	570 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	MRPS24	Q96EL2	167 aa	Known RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	DERL3	Q96Q80	235 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	RHNO1	Q9BSD3	238 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	ZNF471	Q9BX82	626 aa	Predicted RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	MMP28	Q9H239	520 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	SLA2	Q9H6Q3	261 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	LOC102723996	A0A087X1L8	192 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004		F5H0A9	414 aa	Predicted RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	CEACAM1	P13688	526 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	HOXB1	P14653	301 aa	Predicted RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	SEC61A1	P61619	476 aa	Known RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	RAB1A	P62820	205 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	ZFP36L1	Q07352	338 aa	Known RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	C2orf76	Q3KRA6	126 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	TEX30	Q5JUR7	227 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	RHOU	Q7L0Q8	258 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	NOXA1	Q86UR1	476 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	ELMOD2	Q8IZ81	293 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	KIRREL1	Q96J84	757 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	ALKBH3	Q96Q83	286 aa	Predicted RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	C1orf123	Q9NWV4	160 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	CGGBP1	Q9UFW8	167 aa	Predicted RBP	10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	TRAPPC2L	Q9UL33	140 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	TUBG1	P23258	451 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	MMP16	P51512	607 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	ZNF85	Q03923	595 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	SMIM4	Q8WVI0	70 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	GP6	Q9HCN6	339 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	TUBG2	Q9NRH3	451 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	LTBP2	Q14767	1821 aa		10.49	□□□□□ -0.73
RBM39-223	ENST00000463004	NTN3	O00634	580 aa	Predicted RBP	10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	ZFPL1	O95159	310 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	GABRB1	P18505	474 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	NFYA	P23511	347 aa	Predicted RBP	10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	MRPL14	Q6P1L8	145 aa	Known RBP	10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	DRAXIN	Q8NBI3	349 aa	Predicted RBP	10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	C11orf54	Q9H0W9	315 aa	Predicted RBP	10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	OR51B6	Q9H340	312 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	CCDC86	Q9H6F5	360 aa	Known RBP	10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	GPR173	Q9NS66	373 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	SH2D1B	O14796	132 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	IGHV3-9	P01782	118 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	KRTCAP3	Q53RY4	240 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	SLC16A12	Q6ZSM3	486 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	OR51F2	Q8NH61	342 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	RNF133	Q8WVZ7	376 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	HSD17B8	Q92506	261 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	EMG1	Q92979	244 aa	Known RBP	10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	HGD	Q93099	445 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	SLAMF9	Q96A28	289 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	GMPPA	Q96IJ6	420 aa	Predicted RBP	10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	SLC6A15	Q9H2J7	730 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	CACFD1	Q9UGQ2	172 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	PCM1	Q15154	2024 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	SHISA8	B8ZZ34	492 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	DEGS1	O15121	323 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	SPINT2	O43291	252 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	KNG1	P01042	644 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	RRAS2	P62070	204 aa	Predicted RBP	10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	AICDA	Q9GZX7	198 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	ARL6	Q9H0F7	186 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	ZNF275	Q9NSD4	429 aa	Predicted RBP	10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	MRPS18C	Q9Y3D5	142 aa	Known RBP	10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	ANAPC1	Q9H1A4	1944 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	GOSR2	O14653	212 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	IGHM	P01871	453 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	MPG	P29372	298 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	CD96	P40200	585 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	SPINK14	Q6IE38	97 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	ZNF611	Q8N823	705 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	SRR	Q9GZT4	340 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	MPC1	Q9Y5U8	109 aa		10.48	□□□□□ -0.73
RBM39-223	ENST00000463004	OR5B21	A6NL26	309 aa		10.47	□□□□□ -0.73
RBM39-223	ENST00000463004	SRP9	P49458	86 aa	Known RBP	10.47	□□□□□ -0.73
RBM39-223	ENST00000463004	FXYD4	P59646	89 aa		10.47	□□□□□ -0.73
RBM39-223	ENST00000463004	GNG3	P63215	75 aa		10.47	□□□□□ -0.73
RBM39-223	ENST00000463004	CAMK2B	Q13554	666 aa		10.47	□□□□□ -0.73
RBM39-223	ENST00000463004	TSEN54	Q7Z6J9	526 aa	Known RBP	10.47	□□□□□ -0.73
RBM39-223	ENST00000463004	CMTM4	Q8IZR5	234 aa		10.47	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms