RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 VSTM2LQ96N03 204 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 IER2Q9BTL4 223 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 TMPRSS5Q9H3S3 457 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.45□□□□□ -0.74
CPSF3-202ENST00000460593 CENPMQ9NSP4 180 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 FBXL17Q9UF56 701 aa10.45□□□□□ -0.74
CPSF3-202ENST00000460593 PUS1Q9Y606 427 aaKnown RBP eCLIP10.45□□□□□ -0.74
CPSF3-202ENST00000460593 SPTBN5Q9NRC6 3674 aaKnown RBP10.44□□□□□ -0.74
CPSF3-202ENST00000460593 UMAD1C9J7I0 102 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 TSPAN15O95858 294 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 CD63P08962 238 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 VSIG8P0DPA2 414 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 IGFALSP35858 605 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 ASCL1P50553 236 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 ZNF239Q16600 458 aaKnown RBP10.44□□□□□ -0.74
CPSF3-202ENST00000460593 ATG4DQ86TL0 474 aaPredicted RBP10.44□□□□□ -0.74
CPSF3-202ENST00000460593 C12orf76Q8N812 135 aaPredicted RBP10.44□□□□□ -0.74
CPSF3-202ENST00000460593 RERGQ96A58 199 aaPredicted RBP10.44□□□□□ -0.74
CPSF3-202ENST00000460593 S100PBPQ96BU1 408 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 C14orf144Q96I85 54 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 TCEAL7Q9BRU2 100 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 SLCO5A1Q9H2Y9 848 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 LSM5Q9Y4Y9 91 aaKnown RBP10.44□□□□□ -0.74
CPSF3-202ENST00000460593 FLVCR1Q9Y5Y0 555 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 PCNX3Q9H6A9 2034 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 NUDT19A8MXV4 375 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 SOCS1O15524 211 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 ZNF217O75362 1048 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 ZNF205O95201 554 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 HKR1P10072 659 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 ACTR1BP42025 376 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 CX3CR1P49238 355 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 INSM1Q01101 510 aaPredicted RBP10.44□□□□□ -0.74
CPSF3-202ENST00000460593 FMODQ06828 376 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 SLC43A2Q8N370 569 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 OR10D4PQ8NGN7 298 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 OR14C36Q8NHC7 312 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 C16orf52Q8NHV5 167 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 ERGIC1Q969X5 290 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 SAT2Q96F10 170 aaPredicted RBP10.44□□□□□ -0.74
CPSF3-202ENST00000460593 SOX7Q9BT81 388 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 DMRT1Q9Y5R6 373 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 TMEM14AQ9Y6G1 99 aa10.44□□□□□ -0.74
CPSF3-202ENST00000460593 A0A1W2PQU0 124 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 CDC14CA4D256 554 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 NPIPB9F8W1W9 429 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 XKRYO14609 159 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 ADH1CP00326 375 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 GLI4P10075 376 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 HPGDP15428 266 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 RIDAP52758 137 aaKnown RBP10.43□□□□□ -0.74
CPSF3-202ENST00000460593 SGCGQ13326 291 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 ZNF141Q15928 474 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 GUK1Q16774 197 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 GAB4Q2WGN9 574 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 SLC18B1Q6NT16 456 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 FIP1L1Q6UN15 594 aaKnown RBP10.43□□□□□ -0.74
CPSF3-202ENST00000460593 SPNS3Q6ZMD2 512 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 HOGA1Q86XE5 327 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 CATSPERDQ86XM0 798 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 ZNF101Q8IZC7 436 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 ARRDC1Q8N5I2 433 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 ZNF321PQ8N8H1 164 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 TIMM29Q9BSF4 260 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 COA3Q9Y2R0 106 aaPredicted RBP10.43□□□□□ -0.74
CPSF3-202ENST00000460593 KPTNQ9Y664 436 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 SPACA6W5XKT8 324 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 RAD51DO75771 328 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 CXCL10P02778 98 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 SLC6A9P48067 706 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 SULT1A2P50226 295 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 STARD6P59095 220 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 BIKQ13323 160 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 ACKR1Q16570 336 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 TMEM128Q5BJH2 165 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 TAF8Q7Z7C8 310 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 WFIKKN2Q8TEU8 576 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 METTL21AQ8WXB1 218 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 RAB3CQ96E17 227 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 AQP10Q96PS8 301 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 ST6GALNAC5Q9BVH7 336 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 SMOC1Q9H4F8 434 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 Q9N2J8 555 aa10.43□□□□□ -0.74
CPSF3-202ENST00000460593 MRPS23Q9Y3D9 190 aaKnown RBP10.43□□□□□ -0.74
CPSF3-202ENST00000460593 A0A0A6YYD4 124 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 RAMP1O60894 148 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 SLC34A2O95436 690 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 FCGR2CP31995 323 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 P2RY4P51582 365 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 ISXQ2M1V0 245 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 CYB5R2Q6BCY4 276 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 WDFY1Q8IWB7 410 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 C8orf44Q96CB5 159 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 ADAT3Q96EY9 351 aaPredicted RBP10.42□□□□□ -0.74
CPSF3-202ENST00000460593 ZFYVE21Q9BQ24 234 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 HDAC8Q9BY41 377 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 SH3BGRL3Q9H299 93 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 SLC26A1Q9H2B4 701 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 LAMA1P25391 3075 aa10.42□□□□□ -0.74
CPSF3-202ENST00000460593 MED12Q93074 2177 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms