RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 RAD23AP54725 363 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 ESRRGP62508 458 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 GRB2P62993 217 aaKnown RBP15.82■□□□□ 0.12
USP39-209ENST00000458268 ZNF92Q03936 586 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 SLC3A1Q07837 685 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 TEX30Q5JUR7 227 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 COLCA1Q6ZS62 124 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 FAM57BQ71RH2 274 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 TIGD4Q8IY51 512 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 PARP8Q8N3A8 854 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 TCEANCQ8N8B7 351 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 ZNF420Q8TAQ5 688 aaPredicted RBP15.82■□□□□ 0.12
USP39-209ENST00000458268 HPS1Q92902 700 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 DVL3Q92997 716 aaPredicted RBP15.82■□□□□ 0.12
USP39-209ENST00000458268 DUS3LQ96G46 650 aaKnown RBP15.82■□□□□ 0.12
USP39-209ENST00000458268 CIB1Q99828 191 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 TMEM100Q9NV29 134 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 PPP1R3CQ9UQK1 317 aa15.82■□□□□ 0.12
USP39-209ENST00000458268 IQCF6A8MYZ5 107 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 SBK2P0C263 348 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 CDH15P55291 814 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 PCK2Q16822 640 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 TIGD6Q17RP2 521 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 LCN1P1Q5VSP4 162 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 KDM4DQ6B0I6 523 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 CENPNQ96H22 339 aaPredicted RBP15.81■□□□□ 0.12
USP39-209ENST00000458268 PGAM5Q96HS1 289 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 IL4I1Q96RQ9 567 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 PKP2Q99959 881 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 GABARAPL1Q9H0R8 117 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 ZNF665Q9H7R5 613 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 TMEM106BQ9NUM4 274 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 H2AFY2Q9P0M6 372 aaPredicted RBP15.81■□□□□ 0.12
USP39-209ENST00000458268 IL19Q9UHD0 177 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 LAMP5Q9UJQ1 280 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 KLHDC2Q9Y2U9 406 aa15.81■□□□□ 0.12
USP39-209ENST00000458268 PSMD9O00233 223 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 MLNRO43193 412 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 ZNF205O95201 554 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 CA6P23280 308 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 SRP9P49458 86 aaKnown RBP15.8■□□□□ 0.12
USP39-209ENST00000458268 ZNF121P58317 390 aaPredicted RBP15.8■□□□□ 0.12
USP39-209ENST00000458268 ACTR3P61158 418 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 OR8G1Q15617 311 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 CR1LQ2VPA4 569 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 SLC35D3Q5M8T2 416 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 LRRN1Q6UXK5 716 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 KRT77Q7Z794 578 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 MOGAT3Q86VF5 341 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 GLCCI1Q86VQ1 547 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 OTOSQ8NHW6 89 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 MEGF10Q96KG7 1140 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 SLC30A2Q9BRI3 323 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 MARCH7Q9H992 704 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 CDC42EP3Q9UKI2 254 aa15.8■□□□□ 0.12
USP39-209ENST00000458268 CD300LBA8K4G0 201 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 B4DSR2 109 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 HNF1AP20823 631 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 SLC2A5P22732 501 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 OTX1P32242 354 aaPredicted RBP15.79■□□□□ 0.12
USP39-209ENST00000458268 FAM120AOSQ5T036 256 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 PRAMEF6Q5VXH4 476 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 SLX4IPQ5VYV7 408 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 PRIMA1Q86XR5 153 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 OR56B2PQ8NGI1 322 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 RNF133Q8WVZ7 376 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 RAB39BQ96DA2 213 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 ADAT1Q9BUB4 502 aaKnown RBP15.79■□□□□ 0.12
USP39-209ENST00000458268 TOR3AQ9H497 397 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 UFSP2Q9NUQ7 469 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 ENOPH1Q9UHY7 261 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 PCDHB10Q9UN67 800 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 NPTNQ9Y639 398 aa15.79■□□□□ 0.12
USP39-209ENST00000458268 CCDC182A6NF36 153 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 ZAR1LA6NP61 321 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 KIAA1324LA8MWY0 1029 aaPredicted RBP15.78■□□□□ 0.12
USP39-209ENST00000458268 XRCC2O43543 280 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 CYB5R3P00387 301 aaPredicted RBP15.78■□□□□ 0.12
USP39-209ENST00000458268 POLR2IP36954 125 aaKnown RBP15.78■□□□□ 0.12
USP39-209ENST00000458268 MMP16P51512 607 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 LMO4P61968 165 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 SLC16A9Q7RTY1 509 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 ZNF454Q8N9F8 522 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 BOLLQ8N9W6 283 aaKnown RBP15.78■□□□□ 0.12
USP39-209ENST00000458268 REEP6Q96HR9 211 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 RAB3IPQ96QF0 476 aaPredicted RBP15.78■□□□□ 0.12
USP39-209ENST00000458268 TEAD3Q99594 435 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 TMEFF2Q9UIK5 374 aaPredicted RBP15.78■□□□□ 0.12
USP39-209ENST00000458268 IKZF2Q9UKS7 526 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 GTF2A1LQ9UNN4 478 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 ORC6Q9Y5N6 252 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 JMJD1CQ15652 2540 aa15.78■□□□□ 0.12
USP39-209ENST00000458268 APOC1P02654 83 aa15.77■□□□□ 0.12
USP39-209ENST00000458268 SRP14P37108 136 aaKnown RBP15.77■□□□□ 0.12
USP39-209ENST00000458268 OPRL1P41146 370 aa15.77■□□□□ 0.12
USP39-209ENST00000458268 ZIK1Q3SY52 487 aaPredicted RBP15.77■□□□□ 0.12
USP39-209ENST00000458268 OR51F2Q8NH61 342 aa15.77■□□□□ 0.12
USP39-209ENST00000458268 TMEM163Q8TC26 289 aa15.77■□□□□ 0.12
USP39-209ENST00000458268 CNN2Q99439 309 aaKnown RBP15.77■□□□□ 0.12
USP39-209ENST00000458268 RBM4BQ9BQ04 359 aaKnown RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms