RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 PPP1R3DO95685 299 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 COX4I1P13073 169 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 CFHR2P36980 270 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 GSK3BP49841 420 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 TRAP1Q12931 704 aaKnown RBP11.05□□□□□ -0.64
HMGB3-204ENST00000448905 SFRP4Q6FHJ7 346 aaPredicted RBP11.05□□□□□ -0.64
HMGB3-204ENST00000448905 GLYATQ6IB77 296 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 SLC18B1Q6NT16 456 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 SLC26A10Q8NG04 563 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 UBE2FQ969M7 185 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 WDFY2Q96P53 400 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 IFT27Q9BW83 186 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 CHIAQ9BZP6 476 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 MMP27Q9H306 513 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 DPAGT1Q9H3H5 408 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 C14orf119Q9NWQ9 140 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 C1RLQ9NZP8 487 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 ARMCX1Q9P291 453 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 CYB5R1Q9UHQ9 305 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 CAB39Q9Y376 341 aaPredicted RBP11.05□□□□□ -0.64
HMGB3-204ENST00000448905 FAM96BQ9Y3D0 163 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 PKD1L1Q8TDX9 2849 aa11.05□□□□□ -0.64
HMGB3-204ENST00000448905 CENPVL3A0A0U1RRI6 287 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 CD300LBA8K4G0 201 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 DCTN6O00399 190 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 NME4O00746 187 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 MELTFP08582 738 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 GRK5P34947 590 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 MPPED2Q15777 294 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 KRTAP27-1Q3LI81 207 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 CLEC12AQ5QGZ9 265 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 NAA40Q86UY6 237 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 ZBTB46Q86UZ6 589 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 LINC00346Q8IVM7 164 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 SCCPDHQ8NBX0 429 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 C19orf18Q8NEA5 215 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 OR4C15Q8NGM1 316 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 OR4K13Q8NH42 304 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 WFDC12Q8WWY7 111 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 CMTM5Q96DZ9 223 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 CITED1Q99966 193 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 CNTD2Q9H8S5 307 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 RPRD1BQ9NQG5 326 aaKnown RBP11.04□□□□□ -0.64
HMGB3-204ENST00000448905 MRPL15Q9P015 296 aaKnown RBP11.04□□□□□ -0.64
HMGB3-204ENST00000448905 PDP1Q9P0J1 537 aaPredicted RBP11.04□□□□□ -0.64
HMGB3-204ENST00000448905 RNF114Q9Y508 228 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 WNK2Q9Y3S1 2297 aa11.04□□□□□ -0.64
HMGB3-204ENST00000448905 IGHV1-69DA0A0B4J2H0 117 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 A0A0G2JK05 382 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 TRBV4-1A0A0J9YWV2 114 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 OOEPA6NGQ2 149 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 C22orf46C9J442 243 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 C3orf80F5H4A9 247 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 M0R135 149 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 GADD45GO95257 159 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 IGHV1-69P01742 117 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 GRPP07492 148 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 SFTPBP07988 381 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 NCK1P16333 377 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 HIST1H1CP16403 213 aaKnown RBP11.03□□□□□ -0.64
HMGB3-204ENST00000448905 TAF13Q15543 124 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 PRAMEF6Q5VXH4 476 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 HACD2Q6Y1H2 254 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 CFAP77Q6ZQR2 320 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 FANK1Q8TC84 345 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 LRTOMTQ8WZ04 291 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 LHX4Q969G2 390 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 MCUR1Q96AQ8 359 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 ZNF799Q96GE5 643 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 C7orf34Q96L11 122 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 ADAT1Q9BUB4 502 aaKnown RBP11.03□□□□□ -0.64
HMGB3-204ENST00000448905 OR52D1Q9H346 318 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 DCAF13Q9NV06 445 aaKnown RBP11.03□□□□□ -0.64
HMGB3-204ENST00000448905 C1orf123Q9NWV4 160 aa11.03□□□□□ -0.64
HMGB3-204ENST00000448905 GMPR2Q9P2T1 348 aaKnown RBP11.03□□□□□ -0.64
HMGB3-204ENST00000448905 BTBD17A6NE02 478 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 A6NLC8 198 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 BHLHE40O14503 412 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 OR10H3O60404 316 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 DDOSTP39656 456 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 NUDT2P50583 147 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 FXYD6P3P58550 94 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 ARF6P62330 175 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 SRSF4Q08170 494 aaKnown RBP11.02□□□□□ -0.65
HMGB3-204ENST00000448905 SEC23BQ15437 767 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 TAF9Q16594 264 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 RUSC1-AS1Q66K80 236 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 DRAM2Q6UX65 266 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 GDPGP1Q6ZNW5 385 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 BTN2A1Q7KYR7 527 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 NPRL2Q8WTW4 380 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 PYURFQ96I23 114 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 OPA3Q9H6K4 179 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 SP140LQ9H930 580 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 ADA2Q9NZK5 511 aa11.02□□□□□ -0.65
HMGB3-204ENST00000448905 hCG_1807616A0A1W2PRN6 198 aa11.01□□□□□ -0.65
HMGB3-204ENST00000448905 ANKRD30BLA7E2S9 258 aa11.01□□□□□ -0.65
HMGB3-204ENST00000448905 GPR37O15354 613 aa11.01□□□□□ -0.65
HMGB3-204ENST00000448905 DIRAS1O95057 198 aa11.01□□□□□ -0.65
HMGB3-204ENST00000448905 PTBP3O95758 552 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 151.7 ms