RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 MUS81Q96NY9 551 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF385AQ96PM9 386 aaKnown RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 DUX5Q96PT3 197 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ABHD1Q96SE0 405 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 BTBD10Q9BSF8 475 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MED18Q9BUE0 208 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 NMNAT1Q9HAN9 279 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MEPEQ9NQ76 525 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 SLC7A10Q9NS82 523 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TAS2R5Q9NYW4 299 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 B3GAT1Q9P2W7 334 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 STX18Q9P2W9 335 aaKnown RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 SPTAN1Q13813 2472 aaKnown RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ZFHX4Q86UP3 3567 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ARHGAP21Q5T5U3 1957 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 USP9YO00507 2555 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 A0A087WUU8 490 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 A0A1W2PRG6 482 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ENO4A6NNW6 628 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 CENPBD1B2RD01 187 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 FAM90A26D6RGX4 464 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 RPL36A-HNRNPH2H7BZ11 118 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TRAF3IP2O43734 574 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MGRN1O60291 552 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 KRT33AO76009 404 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 KRT36O76013 467 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 BCL10O95999 233 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 HPRP00739 348 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 SEMG1P04279 462 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 FABP3P05413 133 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TSPAN19P0C672 248 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 UMPSP11172 480 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 IFI30P13284 250 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 CBLP22681 906 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 AHCYP23526 432 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 EDNRAP25101 427 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 YAP1P46937 504 aaKnown RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 SLC9A3P48764 834 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 SH3BGRP55822 239 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MS4A2Q01362 244 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 IL1RL1Q01638 556 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 CHRNB3Q05901 458 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 PUDPQ08623 228 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 SNTB1Q13884 538 aaKnown RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 GABRA6Q16445 453 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 FAM98BQ52LJ0 330 aaKnown RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 BEX5Q5H9J7 111 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 LCN8Q6JVE9 175 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 NIPAL3Q6P499 406 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 FAM122CQ6P4D5 195 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF730Q6ZMV8 503 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 Q6ZTC4 211 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TMPRSS11FQ6ZWK6 438 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MBOAT2Q6ZWT7 520 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 SLC35D2Q76EJ3 337 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 HDDC2Q7Z4H3 204 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 NANOGNBQ7Z5D8 188 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ZNF329Q86UD4 541 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 AQP12AQ8IXF9 295 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 CCDC36Q8IYA8 594 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 C20orf196Q8IYI0 205 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 GPR137CQ8N3F9 429 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 C17orf78Q8N4C9 275 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 LINC00471Q8N535 108 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 RFLNBQ8N5W9 214 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 OR6X1Q8NH79 312 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 THAP6Q8TBB0 222 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MAGEE2Q8TD90 523 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TMEM255BQ8WV15 326 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 S100PBPQ96BU1 408 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 BPIFA2Q96DR5 249 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ASB9Q96DX5 294 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 LURAP1Q96LR2 239 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 OR2M2Q96R28 347 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 THTPAQ9BU02 230 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TRIM15Q9C019 465 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 NDEL1Q9GZM8 345 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 ACTR6Q9GZN1 396 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MMP27Q9H306 513 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MMADHCQ9H3L0 296 aaPredicted RBP2.14□□□□□ -2.07
VPS13A-208ENST00000423463 IL1RAPQ9NPH3 570 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 B3GAT2Q9NPZ5 323 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 INIPQ9NRY2 104 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MAN2C1Q9NTJ4 1040 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TAS2R16Q9NYV7 291 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 KCNG2Q9UJ96 466 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 TMCC3Q9ULS5 477 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 AMDHD2Q9Y303 409 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 LRRK2Q5S007 2527 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 WDFY3Q8IZQ1 3526 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 MED12LQ86YW9 2145 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 KIAA1549Q9HCM3 1950 aa2.14□□□□□ -2.07
VPS13A-208ENST00000423463 GCN1Q92616 2671 aaKnown RBP2.13□□□□□ -2.07
VPS13A-208ENST00000423463 hCG_1809904A0A1W2PP81 198 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 A0A1W2PPE2 198 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 A0A1W2PR64 198 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 OR5H1A6NKK0 313 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 CYSRT1A8MQ03 144 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 DEFB108AA8MXU0 73 aa2.13□□□□□ -2.07
VPS13A-208ENST00000423463 EFCAB9A8MZ26 197 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms