RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 OR10K1Q8NGX5 313 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 SLAMF6Q96DU3 332 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF486Q96H40 463 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-204ENST00000423058 FAM90A27PA6NNH2 459 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 J3KTA2 159 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 DDOSTP39656 456 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 TRMT12Q53H54 448 aaKnown RBP6.24□□□□□ -1.41
SCN1A-204ENST00000423058 CALHM3Q86XJ0 350 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PARP16Q8N5Y8 322 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 BCORP1Q8N888 145 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF485Q8NCK3 441 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 NPEPL1Q8NDH3 523 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 OR52I1Q8NGK6 324 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 SPPL3Q8TCT6 385 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 UBTD2Q8WUN7 234 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 RASD2Q96D21 266 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 MISP3Q96FF7 219 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 NDUFB11Q9NX14 153 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 C1RLQ9NZP8 487 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 FER1L5A0AVI2 2057 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 LOC102723971A0A1B0GUV8 181 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 FAM53BQ14153 422 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 NHLRC1Q6VVB1 395 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 OR2A1Q8NGT9 310 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 LMO3Q8TAP4 145 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PSENENQ9NZ42 101 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 SLAMF8Q9P0V8 285 aa6.24□□□□□ -1.41
SCN1A-204ENST00000423058 PDGFBP01127 241 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-204ENST00000423058 SNRPBP14678 240 aaKnown RBP6.23□□□□□ -1.41
SCN1A-204ENST00000423058 NTF3P20783 257 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 MDH2P40926 338 aaKnown RBP6.23□□□□□ -1.41
SCN1A-204ENST00000423058 OPRK1P41145 380 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 HAAOP46952 286 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 SUMO3P55854 103 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-204ENST00000423058 AVPI1Q5T686 147 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 ABHD17CQ6PCB6 329 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 DNAJC5GQ8N7S2 189 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 GPX8Q8TED1 209 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 SLCO4A1Q96BD0 722 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 CHST8Q9H2A9 424 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 SLC26A1Q9H2B4 701 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 RHOFQ9HBH0 211 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 NAGKQ9UJ70 344 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 LSM2Q9Y333 95 aaKnown RBP6.23□□□□□ -1.41
SCN1A-204ENST00000423058 M0R082 166 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 RAB9AP51151 201 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 CLDN15P56746 228 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 ALKBH6Q3KRA9 238 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 SLCO4C1Q6ZQN7 724 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 SSX7Q7RTT5 188 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 TMEM255BQ8WV15 326 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-204ENST00000423058 SEC22AQ96IW7 307 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 RBM14Q96PK6 669 aaKnown RBP6.23□□□□□ -1.41
SCN1A-204ENST00000423058 QRSL1Q9H0R6 528 aaKnown RBP6.23□□□□□ -1.41
SCN1A-204ENST00000423058 PDLIM7Q9NR12 457 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 CRISP2P16562 243 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 C21orf58P58505 322 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 ERVFC1-1P60608 527 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 SHBQ15464 509 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 GSG1Q2KHT4 349 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF788Q6ZQV5 615 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 OR52N1Q8NH53 320 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 OR2V1Q8NHB1 315 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 ZNF764Q96H86 408 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-204ENST00000423058 FBXL2Q9UKC9 423 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 FOXJ3Q9UPW0 622 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 CCL26Q9Y258 94 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 AHCTF1Q8WYP5 2266 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 TEX50A0A1B0GTY4 177 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 CYR61O00622 381 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 CIDEAO60543 219 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 SELENOFO60613 162 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 OR2J2O76002 312 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 DPTQ07507 201 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 SSPNQ14714 243 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 UBE3DQ7Z6J8 389 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 OR13C5Q8NGS8 318 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 OR6S1Q8NH40 331 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 MARC2Q969Z3 335 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 RASL11BQ9BPW5 248 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 PIGMQ9H3S5 423 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 FBXL17Q9UF56 701 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 MBD1Q9UIS9 605 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-204ENST00000423058 BRWD1Q9NSI6 2320 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 TOX4O94842 621 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 S100A11P31949 105 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 FOXA1P55317 472 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 OR52N5Q8NH56 324 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 PRR7Q8TB68 274 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 TVP23CQ96ET8 276 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 BANF2Q9H503 90 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 ASH2LQ9UBL3 628 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 NPTNQ9Y639 398 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 A0A087WV62 115 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 FRG2CA6NGY1 282 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 ACP1P24666 158 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 PCSK6P29122 969 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 RTP5Q14D33 572 aa6.23□□□□□ -1.41
SCN1A-204ENST00000423058 PYCR3Q53H96 274 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms