RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 OR5D14Q8NGL3 314 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 OR8K3Q8NH51 312 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 KCNG3Q8TAE7 436 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 MALSU1Q96EH3 234 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TCEAL7Q9BRU2 100 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 MTIF3Q9H2K0 278 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 PDE7BQ9NP56 450 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TUBD1Q9UJT1 453 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 OSGIN2Q9Y236 505 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TIMM10BQ9Y5J6 103 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 CSAG2Q9Y5P2 127 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 PRRC2BQ5JSZ5 2229 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 KIAA1549Q9HCM3 1950 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 PCNX3Q9H6A9 2034 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 IGLV3-32A0A0A0MS00 114 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 LOC102725191A0A1B0GVB3 256 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM269A0A1B0GVZ9 245 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 MEIS3P1A6NDR6 274 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TLCD2A6NGC4 264 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM150CB9EJG8 249 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 PRSS44E7EML9 344 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 MS4A18H0YCH9 400 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 GPR31O00270 319 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 KLF8O95600 359 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 RPS2P15880 293 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 HIST1H1DP16402 221 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF823P16415 610 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 SERPINF1P36955 418 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 APOBEC1P41238 236 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 MEOX2P50222 304 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 HSD11B2P80365 405 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 GFOD2Q3B7J2 385 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 MS4A18Q3C1V0 323 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 C9orf50Q5SZB4 431 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 POC1AQ8NBT0 407 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 ZNF248Q8NDW4 579 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM230Q96A57 120 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 C10orf35Q96D05 121 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 LMF1Q96S06 567 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 LPAR5Q9H1C0 372 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TLNRD1Q9H1K6 362 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC26A1Q9H2B4 701 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 HIPK2Q9H2X6 1198 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 KCNK15Q9H427 330 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 C5orf66Q9H5L9 145 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 ASF1BQ9NVP2 202 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 CGGBP1Q9UFW8 167 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 SUSD2Q9UGT4 822 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 B3GALT5Q9Y2C3 310 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 MEMO1Q9Y316 297 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 EMC9Q9Y3B6 208 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 FLVCR1Q9Y5Y0 555 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 KPTNQ9Y664 436 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 FREM3P0C091 2139 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 MEX3AA1L020 520 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 ANKUB1A6NFN9 424 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 COLCA2A8K830 154 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 H0YIZ8 118 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 UBE2CO00762 179 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 MBTPS2O43462 519 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 CST4P01036 141 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 IFNA6P05013 189 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 IGHV4-34P06331 123 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 IL12BP29460 328 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 HRH1P35367 487 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 F2RL1P55085 397 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 CLDN6P56747 220 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 PPP1CAP62136 330 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 ECH1Q13011 328 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 FZD2Q14332 565 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 SGCAQ16586 387 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM95Q3KNT9 176 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 SCGB2B2Q4G0G5 96 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 FAM109BQ6ICB4 259 aaPredicted RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC35D2Q76EJ3 337 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 SLC16A14Q7RTX9 510 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TMEM151BQ8IW70 566 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 OR56B1Q8NGI3 324 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 OR4K15Q8NH41 348 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 DAZLQ92904 295 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 FGF14Q92915 247 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 EMG1Q92979 244 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 RRNAD1Q96FB5 475 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 CLUHP3Q96NS8 147 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TM2D1Q9BX74 207 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 MRPL13Q9BYD1 178 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 ESRP2Q9H6T0 727 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 SMCO4Q9NRQ5 59 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 STARD5Q9NSY2 213 aa5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 MYEF2Q9P2K5 600 aaKnown RBP5.1□□□□□ -1.59
CCDC88A-203ENST00000412148 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 DCDC2BA2VCK2 349 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 NUPL2O15504 423 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 HCRTR2O43614 444 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 HLA-DQA2P01906 255 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 HKR1P10072 659 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 NAT2P11245 290 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 PRF1P14222 555 aa5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 FKBP2P26885 142 aaKnown RBP5.09□□□□□ -1.59
CCDC88A-203ENST00000412148 DVL1P1P54792 670 aaPredicted RBP5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms