RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 COMMD9Q9P000 198 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 MCRIP1C9JLW8 97 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 SULT1B1O43704 296 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 PRAF2O60831 178 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 LPLP06858 475 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 GUSBP08236 651 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 ACTBP60709 375 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 ACTG1P63261 375 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 DHRS2Q13268 280 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 BTN1A1Q13410 526 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 UNC119Q13432 240 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 PPP1R1AQ13522 171 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 AKIRIN2Q53H80 203 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 ZNF441Q8N8Z8 693 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 WDSUB1Q8N9V3 476 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 ZBTB8AQ96BR9 441 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 TMPRSS13Q9BYE2 586 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 GSX2Q9BZM3 304 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 ZC4H2Q9NQZ6 224 aa11.87□□□□□ -0.51
VPS54-203ENST00000409558 ZNF275Q9NSD4 429 aaPredicted RBP11.87□□□□□ -0.51
VPS54-203ENST00000409558 ERCC1P07992 297 aaPredicted RBP11.86□□□□□ -0.51
VPS54-203ENST00000409558 TEX30Q5JUR7 227 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 ATPAF1Q5TC12 328 aaPredicted RBP11.86□□□□□ -0.51
VPS54-203ENST00000409558 C1QL2Q7Z5L3 287 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 OR51T1Q8NGJ9 327 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 CACNA1DQ01668 2161 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 ZNF878C9JN71 531 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 GALNSP34059 522 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 LUMP51884 338 aaPredicted RBP11.86□□□□□ -0.51
VPS54-203ENST00000409558 GMFBP60983 142 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 WDR74Q6RFH5 385 aaPredicted RBP11.86□□□□□ -0.51
VPS54-203ENST00000409558 NPDC1Q9NQX5 325 aaPredicted RBP11.86□□□□□ -0.51
VPS54-203ENST00000409558 HPF1Q9NWY4 346 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 COLQQ9Y215 455 aaPredicted RBP11.86□□□□□ -0.51
VPS54-203ENST00000409558 A0A0G2JMM0 328 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 A0A1W2PPB8 328 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 A0A1W2PRS3 328 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 KIR3DP1A8MWS1 328 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 C3orf80F5H4A9 247 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 TO15178 435 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 STK17BO94768 372 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 RLN2P04090 185 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 ATF4P18848 351 aaPredicted RBP11.86□□□□□ -0.51
VPS54-203ENST00000409558 S100A11P31949 105 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 HLXQ14774 488 aaPredicted RBP11.86□□□□□ -0.51
VPS54-203ENST00000409558 OR14L1PQ8NHC6 308 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 ST8SIA1Q92185 356 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 DYRK2Q92630 601 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 EDAQ92838 391 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 CDX2Q99626 313 aaPredicted RBP11.86□□□□□ -0.51
VPS54-203ENST00000409558 KCNK7Q9Y2U2 307 aa11.86□□□□□ -0.51
VPS54-203ENST00000409558 DIDO1Q9BTC0 2240 aaKnown RBP11.86□□□□□ -0.51
VPS54-203ENST00000409558 APOC3P02656 99 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 RAP2BP61225 183 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 PHYHD1Q5SRE7 291 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 TMPPEQ6ZT21 453 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 GALNT11Q8NCW6 608 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 DNASE2BQ8WZ79 361 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 ARHGAP5-AS1Q96IT6 56 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 HDHD3Q9BSH5 251 aaPredicted RBP11.85□□□□□ -0.51
VPS54-203ENST00000409558 B3GNT2Q9NY97 397 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 VSIG4Q9Y279 399 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 ATP1B3P54709 279 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 AKR7LQ8NHP1 331 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 GPX8Q8TED1 209 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 WNT2BQ93097 391 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 ALKBH4Q9NXW9 302 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 TAS2R8Q9NYW2 309 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 B3GALT1Q9Y5Z6 326 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 POLEQ07864 2286 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 ESPL1Q14674 2120 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 SPRY1O43609 319 aaPredicted RBP11.85□□□□□ -0.51
VPS54-203ENST00000409558 HOXB5P09067 269 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 FCGR2AP12318 317 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 CSNK1A1P48729 337 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 MRPS10P82664 201 aaKnown RBP11.85□□□□□ -0.51
VPS54-203ENST00000409558 RABEPKQ7Z6M1 372 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 CCNL2Q96S94 520 aaPredicted RBP11.85□□□□□ -0.51
VPS54-203ENST00000409558 GPR173Q9NS66 373 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 WIPF3A6NGB9 483 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 ADAP1O75689 374 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 CCL2P13500 99 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 HOXD11P31277 338 aaPredicted RBP11.85□□□□□ -0.51
VPS54-203ENST00000409558 OPRM1P35372 400 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 OR3A2P47893 321 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 ROM1Q03395 351 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 CAMK2BQ13554 666 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 GK2Q14410 553 aaPredicted RBP11.85□□□□□ -0.51
VPS54-203ENST00000409558 TMEM200AQ86VY9 491 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 OR4K15Q8NH41 348 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 SLC25A28Q96A46 364 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 LINC00052Q96N35 136 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 ZNF581Q9P0T4 197 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 B3GALT5Q9Y2C3 310 aa11.85□□□□□ -0.51
VPS54-203ENST00000409558 ADAMTS9Q9P2N4 1935 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 NSG1A0A0A6YYJ2 146 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 OR6C76A6NM76 312 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 C9J4A7 227 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 B4GALT1P15291 398 aa11.84□□□□□ -0.51
VPS54-203ENST00000409558 S100A10P60903 97 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms