RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SNTB1Q13884 538 aaKnown RBP6.59□□□□□ -1.35
SCN9A-202ENST00000409435 HNF4GQ14541 408 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 FCN2Q15485 313 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 GSG1Q2KHT4 349 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 OR52W1Q6IF63 320 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 OGFOD3Q6PK18 319 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 TMPRSS11FQ6ZWK6 438 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 CNN2Q99439 309 aaKnown RBP6.59□□□□□ -1.35
SCN9A-202ENST00000409435 ATG101Q9BSB4 218 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 OR51I2Q9H344 312 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 MAGIXQ9H6Y5 334 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 HDGFL3Q9Y3E1 203 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 LTBP1Q14766 1721 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 BMPR1BO00238 502 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 DNPH1O43598 174 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 C1QBP02746 253 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 PF4V1P10720 104 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 MAP2K6P52564 334 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 RBMS2Q15434 407 aaKnown RBP6.59□□□□□ -1.35
SCN9A-202ENST00000409435 UNC50Q53HI1 259 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 EXOSC6Q5RKV6 272 aaKnown RBP6.59□□□□□ -1.35
SCN9A-202ENST00000409435 UQCC3Q6UW78 93 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF620Q6ZNG0 422 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF587Q96SQ5 575 aaPredicted RBP6.59□□□□□ -1.35
SCN9A-202ENST00000409435 TMEM30AQ9NV96 361 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 TUBD1Q9UJT1 453 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 MN1Q10571 1320 aaPredicted RBP6.59□□□□□ -1.35
SCN9A-202ENST00000409435 F5P12259 2224 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 ADAMTSL1Q8N6G6 1762 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 GRPRP30550 384 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 BMI1P35226 326 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 FXYD4P59646 89 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 MICAQ29983 383 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 PAGE3Q5JUK9 113 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 THEM4Q5T1C6 240 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 VRK2Q86Y07 508 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 SLC22A18ASQ8N1D0 253 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 OR8J3Q8NGG0 315 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF417Q8TAU3 575 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 STACQ99469 402 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 CMSS1Q9BQ75 279 aaKnown RBP6.59□□□□□ -1.35
SCN9A-202ENST00000409435 TTTY10Q9BZA0 68 aa6.59□□□□□ -1.35
SCN9A-202ENST00000409435 GSX1Q9H4S2 264 aaPredicted RBP6.59□□□□□ -1.35
SCN9A-202ENST00000409435 ZNF256Q9Y2P7 627 aaPredicted RBP6.59□□□□□ -1.35
SCN9A-202ENST00000409435 A6NDN8 102 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 FGF17O60258 216 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 ZIC2O95409 532 aaPredicted RBP6.59□□□□□ -1.36
SCN9A-202ENST00000409435 CAPNS1P04632 268 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 ARSBP15848 533 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 PCSK6P29122 969 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 CD96P40200 585 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 GPR4P46093 362 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 TNFAIP6P98066 277 aaPredicted RBP6.59□□□□□ -1.36
SCN9A-202ENST00000409435 EDDM3AQ14507 147 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 MSMO1Q15800 293 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 C3AR1Q16581 482 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 NRARPQ7Z6K4 114 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 ZNF321PQ8N8H1 164 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 OR5B3Q8NH48 314 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 GATA6Q92908 595 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 PHYHIPLQ96FC7 376 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 MAP6Q96JE9 813 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 PIP5K1AQ99755 562 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 CABLES2Q9BTV7 478 aa6.59□□□□□ -1.36
SCN9A-202ENST00000409435 A0A1W2PR77 199 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 KDM4EB2RXH2 506 aaPredicted RBP6.58□□□□□ -1.36
SCN9A-202ENST00000409435 CD1EP15812 388 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 SLC6A12P48065 614 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 AMTP48728 403 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 TCEAL1Q15170 157 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 GTDC1Q4AE62 458 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 CCSMST1Q4G0I0 132 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 FAM57BQ71RH2 274 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 TMEM239Q8WW34 195 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 TMIGD2Q96BF3 282 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 PKIBQ9C010 78 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 TREX1Q9NSU2 369 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 RBFOX1Q9NWB1 397 aaKnown RBP6.58□□□□□ -1.36
SCN9A-202ENST00000409435 TMEM218A2RU14 115 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 ZNF732B4DXR9 585 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 EML2O95834 649 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 DEFA4P12838 97 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 SERPINA2P20848 420 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 ACKR3P25106 362 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 RAB11AP62491 216 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 TOR2AQ5JU69 321 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 APH1BQ8WW43 257 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 LAT2Q9GZY6 243 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 TCF20Q9UGU0 1960 aaKnown RBP6.58□□□□□ -1.36
SCN9A-202ENST00000409435 TRBV23-1A0A0A0MS06 115 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 OR2M5A3KFT3 312 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 C5orf52A6NGY3 159 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 RFPL4AA6NLU0 287 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 RFPL4AL1F8VTS6 287 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 PRKRAO75569 313 aaKnown RBP6.58□□□□□ -1.36
SCN9A-202ENST00000409435 CSF3P09919 207 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 ZP3P21754 424 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 MPGP29372 298 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 TNFSF8P32971 234 aa6.58□□□□□ -1.36
SCN9A-202ENST00000409435 P2RX3P56373 397 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms