RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RPL7L1Q6DKI1 246 aaKnown RBP18.65■□□□□ 0.58
CTCF-202ENST00000401394 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.65■□□□□ 0.58
CTCF-202ENST00000401394 ZNF775Q96BV0 537 aaPredicted RBP18.65■□□□□ 0.58
CTCF-202ENST00000401394 TMEM41AQ96HV5 264 aa18.65■□□□□ 0.58
CTCF-202ENST00000401394 NDRG3Q9UGV2 375 aa18.65■□□□□ 0.58
CTCF-202ENST00000401394 SDK2Q58EX2 2172 aa18.64■□□□□ 0.58
CTCF-202ENST00000401394 TNFRSF10CO14798 259 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 FGF16O43320 207 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 GLI4P10075 376 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 GP1BBP13224 206 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 PLCXD2Q0VAA5 305 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 OR2A2Q6IF42 318 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 CLEC18BQ6UXF7 455 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 OR10S1Q8NGN2 331 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 ASB17Q8WXJ9 295 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 C20orf24Q9BUV8 137 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 LRRC61Q9BV99 259 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 LAT2Q9GZY6 243 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 OBP2AQ9NY56 170 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 A0A1B0GW55 424 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 MS4A18H0YCH9 400 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 TO15178 435 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 SEMA4FO95754 770 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 H2BFMP0C1H6 154 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 DUX4L2P0CJ85 424 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 DUX4L3P0CJ86 424 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 DUX4L4P0CJ87 422 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 DUX4L5P0CJ88 424 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 DUX4L6P0CJ89 424 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 DUX4L7P0CJ90 424 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 TNFRSF4P43489 277 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 PRSS12P56730 875 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 SRSF4Q08170 494 aaKnown RBP18.64■□□□□ 0.57
CTCF-202ENST00000401394 MS4A18Q3C1V0 323 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 RAB11FIP2Q7L804 512 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 EDAQ92838 391 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 CNTNAP3BQ96NU0 1288 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 DUX4Q9UBX2 424 aa18.64■□□□□ 0.57
CTCF-202ENST00000401394 A0A1B0GV50 99 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 PHYHO14832 338 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 EIF3GO75821 320 aaKnown RBP eCLIP18.63■□□□□ 0.57
CTCF-202ENST00000401394 H2AFB1P0C5Y9 115 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 CD79AP11912 226 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 CFPP27918 469 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 EMP2P54851 167 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 HSD17B7P56937 341 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 SUPT4H1P63272 117 aaKnown RBP18.63■□□□□ 0.57
CTCF-202ENST00000401394 QRFPP83859 136 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 PGAP1Q75T13 922 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 NANPQ8TBE9 248 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 ISOC2Q96AB3 205 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 TMEM106CQ9BVX2 250 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 FAM221BA6H8Z2 402 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 METTL21EPA6NDL7 271 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 PRAMEF26H0Y7S4 382 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 HOXC4P09017 264 aaPredicted RBP18.63■□□□□ 0.57
CTCF-202ENST00000401394 KLK2P20151 261 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 ABCD3P28288 659 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 ADH6P28332 368 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 CARD17Q5XLA6 110 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 A0A1W2PPE3 182 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 SYT7O43581 403 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 SNAPC5O75971 98 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 KNG1P01042 644 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 CD80P33681 288 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 RORAP35398 523 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 B2MP61769 119 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 NSDHLQ15738 373 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 C1orf100Q5SVJ3 147 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 FAM71F1Q96KD3 344 aaPredicted RBP18.63■□□□□ 0.57
CTCF-202ENST00000401394 RHOFQ9HBH0 211 aa18.63■□□□□ 0.57
CTCF-202ENST00000401394 VSX1Q9NZR4 365 aaPredicted RBP18.63■□□□□ 0.57
CTCF-202ENST00000401394 DXOO77932 396 aaKnown RBP18.62■□□□□ 0.57
CTCF-202ENST00000401394 DUS4LO95620 317 aaKnown RBP18.62■□□□□ 0.57
CTCF-202ENST00000401394 SFTPBP07988 381 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 TPT1P13693 172 aaKnown RBP18.62■□□□□ 0.57
CTCF-202ENST00000401394 RFC3P40938 356 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 TMEM50BP56557 158 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 SSBP1Q04837 148 aaKnown RBP18.62■□□□□ 0.57
CTCF-202ENST00000401394 GLIPR1L1Q6UWM5 242 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 DTX1Q86Y01 620 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 SEC61A2Q9H9S3 476 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 E9PLN8 166 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 PTGFRP43088 359 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 RIPPLY1Q0D2K3 151 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 Q6ZS52 159 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 GLYATL2Q8WU03 294 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 PHYHIPLQ96FC7 376 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 ARHGAP5-AS1Q96IT6 56 aa18.62■□□□□ 0.57
CTCF-202ENST00000401394 KIR2DS5A0A0G2JLQ3 304 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 A0A0G2JNG1 304 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 KIR2DS3K7RE56 304 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 IGKV3-11P04433 115 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 FSTP19883 344 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 CBX5P45973 191 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 HOXA1P49639 335 aaPredicted RBP18.61■□□□□ 0.57
CTCF-202ENST00000401394 MEF2DQ14814 521 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 KIR2DS5Q14953 304 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 LPCAT3Q6P1A2 487 aa18.61■□□□□ 0.57
CTCF-202ENST00000401394 C1QL2Q7Z5L3 287 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms