RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 RPL11P62913 178 aaKnown RBP10.77□□□□□ -0.68
SYNPO-202ENST00000394243 EGR3Q06889 387 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 TCTN3Q6NUS6 607 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 TRIB1Q96RU8 372 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 CSNK1G1Q9HCP0 422 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 SLC22A13Q9Y226 551 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 CHD4Q14839 1912 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 ARPC3O15145 178 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 SEMA3BQ13214 749 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 TMEM241Q24JQ0 296 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 RTN4IP1Q8WWV3 396 aaPredicted RBP10.77□□□□□ -0.69
SYNPO-202ENST00000394243 SLAMF6Q96DU3 332 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 SFXN1Q9H9B4 322 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 OR1A1Q9P1Q5 309 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 MT-ATP6P00846 226 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 ERVS71-1P61550 626 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 HSD17B13Q7Z5P4 300 aaPredicted RBP10.77□□□□□ -0.69
SYNPO-202ENST00000394243 LHFPL5Q8TAF8 219 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 ERGIC1Q969X5 290 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 MARVELD1Q9BSK0 173 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 BARX1Q9HBU1 254 aaPredicted RBP10.77□□□□□ -0.69
SYNPO-202ENST00000394243 PRDM7Q9NQW5 492 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 ZNF346Q9UL40 294 aaKnown RBP10.77□□□□□ -0.69
SYNPO-202ENST00000394243 CLEC18AA5D8T8 446 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 AKR7A3O95154 331 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 PTHLHP12272 177 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 CSF2RAP15509 400 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 TMEM97Q5BJF2 176 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 FAM209BQ5JX69 171 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 CLEC18CQ8NCF0 446 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 NPAS1Q99742 590 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 EDEM2Q9BV94 578 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 CALHM2Q9HA72 323 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 GNB4Q9HAV0 340 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 CTSAP10619 480 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 NID1P14543 1247 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 ABCD3P28288 659 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 H1FNTQ75WM6 255 aaPredicted RBP10.77□□□□□ -0.69
SYNPO-202ENST00000394243 LILRA3Q8N6C8 439 aaPredicted RBP10.77□□□□□ -0.69
SYNPO-202ENST00000394243 OR2A1Q8NGT9 310 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 STACQ99469 402 aa10.77□□□□□ -0.69
SYNPO-202ENST00000394243 MYADML2A6NDP7 307 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 GYPAP02724 150 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 OR5I1Q13606 314 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 OR8B8Q15620 311 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 B3GAT1Q9P2W7 334 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 SHROOM3Q8TF72 1996 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 KCPQ6ZWJ8 1503 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 FCN1O00602 326 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 TBX19O60806 448 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 GRINAQ7Z429 371 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 UBE3DQ7Z6J8 389 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 OR11L1Q8NGX0 322 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 UQCC1Q9NVA1 299 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 FZD6O60353 706 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 CD1CP29017 333 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 BCL6P41182 706 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 CRYBB2P43320 205 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 CLLU1OSQ5K130 101 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 ABLIM2Q6H8Q1 611 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 CDC20BQ86Y33 519 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 DOK1Q99704 481 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 TMEM9BQ9NQ34 198 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 LIN7CQ9NUP9 197 aaKnown RBP10.76□□□□□ -0.69
SYNPO-202ENST00000394243 HCFC1R1Q9NWW0 138 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 SRPK3Q9UPE1 567 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 ARRDC5A6NEK1 342 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 SOX15O60248 233 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 DAOP14920 347 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 TCN2P20062 427 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 ZNF385BQ569K4 471 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 OTPQ5XKR4 325 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 ABHD17CQ6PCB6 329 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 ETV3LQ6ZN32 361 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 PLPP6Q8IY26 295 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 C17orf78Q8N4C9 275 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 SDF2Q99470 211 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 GPR84Q9NQS5 396 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 ZNF835Q9Y2P0 537 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 MON2Q7Z3U7 1717 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 CNIH1O95406 144 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 ONECUT2O95948 504 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 CRYBA1P05813 215 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 AWAT1Q58HT5 328 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 H1FXQ92522 213 aaKnown RBP10.76□□□□□ -0.69
SYNPO-202ENST00000394243 PRRX2Q99811 253 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 TMEM218A2RU14 115 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 ZNF814B7Z6K7 855 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 SLCO2B1O94956 709 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 CHRNA7P36544 502 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 GPM6AP51674 278 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 CSNK1G2P78368 415 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 DHODHQ02127 395 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 HTR3DQ70Z44 454 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 DND1Q8IYX4 353 aaKnown RBP10.76□□□□□ -0.69
SYNPO-202ENST00000394243 SNX22Q96L94 193 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 WDFY2Q96P53 400 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 C19orf43Q9BQ61 176 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 DYNLRB1Q9NP97 96 aa10.76□□□□□ -0.69
SYNPO-202ENST00000394243 PRAMEF26H0Y7S4 382 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms