RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 FREM3P0C091 2139 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 PPP3CBP16298 524 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 FMODQ06828 376 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 TFF3Q07654 80 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 STK11Q15831 433 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 TEX30Q5JUR7 227 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 RSBN1Q5VWQ0 802 aaPredicted RBP8.94□□□□□ -0.98
VPS53-202ENST00000389040 FBXW9Q5XUX1 488 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 TFAP2EQ6VUC0 442 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 NHLRC1Q6VVB1 395 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 AAED1Q7RTV5 226 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 KRT77Q7Z794 578 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 WDFY1Q8IWB7 410 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 SLC26A10Q8NG04 563 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 OR51A4Q8NGJ6 313 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 OR52N5Q8NH56 324 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 OR6X1Q8NH79 312 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 THRSPQ92748 146 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 BOD1Q96IK1 185 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 PSMG3-AS1Q96PY0 264 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 MRI1Q9BV20 369 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 MED29Q9NX70 200 aa8.94□□□□□ -0.98
VPS53-202ENST00000389040 HELZ2Q9BYK8 2649 aaKnown RBP8.94□□□□□ -0.98
VPS53-202ENST00000389040 A0A0B4J293 547 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 ZNF726A6NNF4 738 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 EEF1E1-BLOC1S5C9J1V9 151 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 TRAF3IP2O43734 574 aaPredicted RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 RAMP1O60894 148 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 MPZL1O95297 269 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 TRAPPC2P0DI81 140 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 TRAPPC2BP0DI82 140 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 ZNF823P16415 610 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 MMP15P51511 669 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 RIDAP52758 137 aaKnown RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 TGFBR3Q03167 851 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 ODF4Q2M2E3 257 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 VWA1Q6PCB0 445 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 NCCRP1Q6ZVX7 275 aaPredicted RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 LRRTM1Q86UE6 522 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 GLCCI1Q86VQ1 547 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 ZNF610Q8N9Z0 462 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 ACBD4Q8NC06 268 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 RELL2Q8NC24 303 aaPredicted RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 OR6F1Q8NGZ6 308 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 OR10AC1Q8NH08 325 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 TMEM106AQ96A25 262 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 ABHD6Q9BV23 337 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 RBM24Q9BX46 236 aaKnown RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 LIN7BQ9HAP6 207 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 NLKQ9UBE8 527 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 RABL2AQ9UBK7 228 aaPredicted RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 ZNF221Q9UK13 617 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 RABL2BQ9UNT1 228 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 PHF3Q92576 2039 aaKnown RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 ALPK2Q86TB3 2170 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 TRAV8-7A0A075B6U6 113 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 ARPC4-TTLL3A0A0A6YYG9 625 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 HMX3A6NHT5 357 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 RPL36A-HNRNPH2H7BZ11 118 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 KHDRBS3O75525 346 aaKnown RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 PNPP00491 289 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 CALCBP10092 127 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 ADRA2CP18825 462 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 PSMB1P20618 241 aaKnown RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 SLC6A1P30531 599 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 BIDP55957 195 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 GPR176Q14439 515 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 PCK2Q16822 640 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 OR7E24Q6IFN5 339 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 PLXDC2Q6UX71 529 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 NUFIP2Q7Z417 695 aaKnown RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 CMTM4Q8IZR5 234 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 TSEN15Q8WW01 171 aaKnown RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 YIPF5Q969M3 257 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 MCHR2Q969V1 340 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 UPRTQ96BW1 309 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 SLC25A44Q96H78 314 aaPredicted RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 ZNF385AQ96PM9 386 aaKnown RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 SPOCK3Q9BQ16 436 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 ABCG5Q9H222 651 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 SLCO5A1Q9H2Y9 848 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 MRPS7Q9Y2R9 242 aaKnown RBP8.93□□□□□ -0.98
VPS53-202ENST00000389040 LRP12Q9Y561 859 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 CACNG2Q9Y698 323 aa8.93□□□□□ -0.98
VPS53-202ENST00000389040 MED12Q93074 2177 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 HIVEP3Q5T1R4 2406 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 IGKV1D-43A0A0B4J1Z2 117 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 ANXA2P2A6NMY6 339 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 C16orf97H3BN30 126 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 H3BSH0 61 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 CTDSPLO15194 276 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 GOSR1O95249 250 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 WNT11O96014 354 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 HRGP04196 525 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 ANXA2P07355 339 aaKnown RBP8.92□□□□□ -0.98
VPS53-202ENST00000389040 KLK2P20151 261 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 DDOSTP39656 456 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 CLDN12P56749 244 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 DGCR2P98153 550 aa8.92□□□□□ -0.98
VPS53-202ENST00000389040 MFGE8Q08431 387 aaPredicted RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms