RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 C2orf50Q96LR7 162 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 MRPL37Q9BZE1 423 aaKnown RBP10.62□□□□□ -0.71
VPS13A-205ENST00000376636 WASHC3Q9Y3C0 194 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 RIMBP3CA6NJZ7 1639 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 RIMBP3BA6NNM3 1639 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 RIMBP3Q9UFD9 1639 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 OR4E1P0C645 316 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 SSX1Q16384 188 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 TTC32Q5I0X7 151 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 ZC3H3Q8IXZ2 948 aaKnown RBP10.62□□□□□ -0.71
VPS13A-205ENST00000376636 P2RY12Q9H244 342 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 BANF2Q9H503 90 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 TAAR2Q9P1P5 351 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 KIF13BQ9NQT8 1826 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 LSM11P83369 360 aaKnown RBP eCLIP10.62□□□□□ -0.71
VPS13A-205ENST00000376636 INPP5JQ15735 1006 aaPredicted RBP10.62□□□□□ -0.71
VPS13A-205ENST00000376636 CCL14Q16627 93 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 GRAMD2BQ96HH9 432 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 MMACHCQ9Y4U1 282 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 XRCC2O43543 280 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 HCRTR1O43613 425 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 DLX1P56177 255 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 CADM3Q8N126 398 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 SLC45A2Q9UMX9 530 aa10.62□□□□□ -0.71
VPS13A-205ENST00000376636 OR1C1Q15619 314 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 HNRNPA1L2Q32P51 320 aaKnown RBP10.61□□□□□ -0.71
VPS13A-205ENST00000376636 SLC35E4Q6ICL7 350 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 ETV3LQ6ZN32 361 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 GDF7Q7Z4P5 450 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 HSD17B13Q7Z5P4 300 aaPredicted RBP10.61□□□□□ -0.71
VPS13A-205ENST00000376636 VRK3Q8IV63 474 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 ZNF480Q8WV37 535 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 NXPE3Q969Y0 559 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 MANBALQ9NQG1 85 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 LOC107986453A0A1B0GWG9 222 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 M0R3E3 92 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 DNPH1O43598 174 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 EDN1P05305 212 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 AANATQ16613 207 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 ZADH2Q8N4Q0 377 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 TMEM255BQ8WV15 326 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 MROH1Q8NDA8 1641 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 ZNF141Q15928 474 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 C1orf140Q5VVS0 124 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 OR52I2Q8NH67 350 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 TWSG1Q9GZX9 223 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 TAS2R4Q9NYW5 299 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 TBX19O60806 448 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 C21orf58P58505 322 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 ZNF280AP59817 542 aaPredicted RBP10.61□□□□□ -0.71
VPS13A-205ENST00000376636 TMEM128Q5BJH2 165 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 C6orf201Q7Z4U5 140 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 OR52L2PQ8NGH6 319 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 C1QTNF3Q9BXJ4 246 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 TIMM10BQ9Y5J6 103 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 OPN1MWP04001 364 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 OPN1MW2P0DN77 364 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 OPN1MW3P0DN78 364 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 TEAD1P28347 426 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 RPL27P61353 136 aaKnown RBP10.61□□□□□ -0.71
VPS13A-205ENST00000376636 LAIR1Q6GTX8 287 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 RAB24Q969Q5 203 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 SMIM19Q96E16 107 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 GPX7Q96SL4 187 aaPredicted RBP10.61□□□□□ -0.71
VPS13A-205ENST00000376636 RRP8O43159 456 aaKnown RBP10.61□□□□□ -0.71
VPS13A-205ENST00000376636 STAG3L3P0CL85 134 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 JUNBP17275 347 aaPredicted RBP10.61□□□□□ -0.71
VPS13A-205ENST00000376636 TAS2R60P59551 318 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 PRDX1Q06830 199 aaKnown RBP10.61□□□□□ -0.71
VPS13A-205ENST00000376636 PNLIPRP3Q17RR3 467 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 C12orf49Q9H741 205 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 A0A087WV62 115 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 KIR2DS2P43631 304 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 PRAMEF20Q5VT98 475 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 EXD3Q8N9H8 876 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 LKAAEAR1Q8TD35 194 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 EDEM2Q9BV94 578 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 MRC1P22897 1456 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 TRGV10A0A0A0MS01 117 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 IAPPP10997 89 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 HIST1H1BP16401 226 aaKnown RBP10.61□□□□□ -0.71
VPS13A-205ENST00000376636 CD38P28907 300 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 YPEL5P62699 121 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 Q6ZNX1 250 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 IGKV6D-41A0A0C4DH26 115 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 POU2F2P09086 479 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 COX19Q49B96 90 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 NANOGP1Q8N7R0 232 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 DCBLD2Q96PD2 775 aa10.61□□□□□ -0.71
VPS13A-205ENST00000376636 A0A1W2PN81 502 aa10.6□□□□□ -0.71
VPS13A-205ENST00000376636 CHRNA7P36544 502 aa10.6□□□□□ -0.71
VPS13A-205ENST00000376636 PNRC1Q12796 327 aaPredicted RBP10.6□□□□□ -0.71
VPS13A-205ENST00000376636 OR2D3Q8NGH3 330 aa10.6□□□□□ -0.71
VPS13A-205ENST00000376636 PCYT2Q99447 389 aa10.6□□□□□ -0.71
VPS13A-205ENST00000376636 SERPINE3A8MV23 424 aa10.6□□□□□ -0.71
VPS13A-205ENST00000376636 H0YGG7 62 aa10.6□□□□□ -0.71
VPS13A-205ENST00000376636 SMIM6P0DI80 62 aa10.6□□□□□ -0.71
VPS13A-205ENST00000376636 CDC20Q12834 499 aa10.6□□□□□ -0.71
VPS13A-205ENST00000376636 TREX1Q9NSU2 369 aa10.6□□□□□ -0.71
VPS13A-205ENST00000376636 DUXBA0A1W2PPF3 345 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms