RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 OR13C8Q8NGS7 320 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 SFXN2Q96NB2 322 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 GUCD1Q96NT3 240 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 SPACA5Q96QH8 159 aa18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 MYOZ1Q9NP98 299 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-203ENST00000359902 TMEM14DPA8MWL7 114 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 H3BUI4 141 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 CER1O95813 267 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 SEC61A1P61619 476 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 ATPAF1Q5TC12 328 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 RAET1LQ5VY80 246 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 AWAT2Q6E213 333 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 TMED4Q7Z7H5 227 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 TRAPPC6BQ86SZ2 158 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 RPS19BP1Q86WX3 136 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 ZNF416Q9BWM5 594 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 MAB21L2Q9Y586 359 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 OR14I1A6ND48 311 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 HMSDA8MTL9 139 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 MASP2O00187 686 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 RGS11O94810 467 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 CCL1P22362 96 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 HOXD11P31277 338 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 SGCAQ16586 387 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 PHYHD1Q5SRE7 291 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 FAM57BQ71RH2 274 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 GVQW1Q8N7I0 195 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 SUN5Q8TC36 379 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 FAM71F1Q96KD3 344 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 ZNF160Q9HCG1 818 aa18.39■□□□□ 0.53
CCDC88B-203ENST00000359902 IGHV3-15A0A0B4J1V0 119 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 CRYZL1O95825 349 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 LSM6P62312 80 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 MEF2DQ14814 521 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 SCGB2B2Q4G0G5 96 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 TRIM61Q5EBN2 209 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 PGAP1Q75T13 922 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 TMEM156Q8N614 296 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 ZNF283Q8N7M2 679 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 ANGPTL6Q8NI99 470 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 PCNPQ8WW12 178 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 JSRP1Q96MG2 331 aaPredicted RBP18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 NSG1A0A0A6YYJ2 146 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 CSN2P05814 226 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 GNB3P16520 340 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 CSNK1A1P48729 337 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 MLF1P58340 268 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 GRB2P62993 217 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 NKPD1Q17RQ9 610 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 SIGIRRQ6IA17 410 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 CD163Q86VB7 1156 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 NUDCD2Q8WVJ2 157 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 TMEM54Q969K7 222 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 ZNF385AQ96PM9 386 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 UCN2Q96RP3 112 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 SLC39A1Q9NY26 324 aa18.38■□□□□ 0.53
CCDC88B-203ENST00000359902 OR6C65A6NJZ3 312 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 DISC1C4P0D8 188 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 E9PLN8 166 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 EIF1BO60739 113 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 SCGNO76038 276 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 CTSSP25774 331 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 GSK3AP49840 483 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 SLC22A6Q4U2R8 563 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 C12orf45Q8N5I9 185 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 OR10R2Q8NGX6 335 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 ZC3H10Q96K80 434 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 C1orf147Q96MC9 270 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 NUDT16L1Q9BRJ7 211 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 SELENOIQ9C0D9 397 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 SLC2A8Q9NY64 477 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 ARPC5O15511 151 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 NR2C1P13056 603 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 CXADRP78310 365 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 RNASE10Q5GAN6 216 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 C10orf128Q5T292 105 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 ZNF468Q5VIY5 522 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 OR52W1Q6IF63 320 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 C11orf88Q6PI97 169 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 GLIPR1L1Q6UWM5 242 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 DOK3Q7L591 496 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 RTN4RL2Q86UN3 420 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 ZNF101Q8IZC7 436 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 GSX2Q9BZM3 304 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 HPF1Q9NWY4 346 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 DKKL1Q9UK85 242 aa18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 MRPS28Q9Y2Q9 187 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-203ENST00000359902 C5orf63A6NC05 138 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 WDPCPO95876 746 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 CD63P08962 238 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 MSR1P21757 451 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 MPZP25189 248 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 FOLR3P41439 243 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 ZNF133P52736 654 aaPredicted RBP18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 GFOD2Q3B7J2 385 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 C3P1Q6ZMU1 363 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 NAA40Q86UY6 237 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 TMEM104Q8NE00 496 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 PRRT1Q99946 306 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 NICN1Q9BSH3 213 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms