RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 UCN2Q96RP3 112 aa13.64□□□□□ -0.23
UPF3B-202ENST00000345865 SLC25A21Q9BQT8 299 aaPredicted RBP13.64□□□□□ -0.23
UPF3B-202ENST00000345865 MYO7BQ6PIF6 2116 aa13.64□□□□□ -0.23
UPF3B-202ENST00000345865 ZDBF2Q9HCK1 2354 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 A0A0A6YYD4 124 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 TMEM14DPA8MWL7 114 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 H3BUI4 141 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 CX3CR1P49238 355 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 CAMK2BQ13554 666 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 TOR2AQ5JU69 321 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 AWAT2Q6E213 333 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 RAB12Q6IQ22 244 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 TMEM81Q6P7N7 255 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 COMMD2Q86X83 199 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 AGBL5Q8NDL9 886 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 TMEM104Q8NE00 496 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 NTNG2Q96CW9 530 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 FAM71F1Q96KD3 344 aaPredicted RBP13.63□□□□□ -0.23
UPF3B-202ENST00000345865 ANGPTL4Q9BY76 406 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 VSIG4Q9Y279 399 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 MAB21L2Q9Y586 359 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 OR6C65A6NJZ3 312 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 PMS2P2O95744 297 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 LIPCP11150 499 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 LIFP15018 202 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 ZNF20P17024 532 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 GFOD2Q3B7J2 385 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 NHLRC3Q5JS37 347 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 OPN5Q6U736 354 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 FAM57BQ71RH2 274 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 SELENOIQ9C0D9 397 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 MOB1AQ9H8S9 216 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 SH2D2AQ9NP31 389 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 GLTPQ9NZD2 209 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 UPB1Q9UBR1 384 aa13.63□□□□□ -0.23
UPF3B-202ENST00000345865 ZNF230Q9UIE0 474 aaPredicted RBP13.63□□□□□ -0.23
UPF3B-202ENST00000345865 ZNF107Q9UII5 783 aaPredicted RBP13.63□□□□□ -0.23
UPF3B-202ENST00000345865 FXYD6-FXYD2A0A087WZ82 144 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 A0A1W2PP11 408 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 HMSDA8MTL9 139 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 SMAD9O15198 467 aaKnown RBP13.62□□□□□ -0.23
UPF3B-202ENST00000345865 SSX5O60225 188 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 CD63P08962 238 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 OR3A4PP47883 348 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 DHRS2Q13268 280 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 HLXQ14774 488 aaPredicted RBP13.62□□□□□ -0.23
UPF3B-202ENST00000345865 SGCAQ16586 387 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 PEAR1Q5VY43 1037 aaPredicted RBP13.62□□□□□ -0.23
UPF3B-202ENST00000345865 C3P1Q6ZMU1 363 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 PAQR8Q8TEZ7 354 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 JSRP1Q96MG2 331 aaPredicted RBP13.62□□□□□ -0.23
UPF3B-202ENST00000345865 GSX2Q9BZM3 304 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 FXYD6Q9H0Q3 95 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 KCNK7Q9Y2U2 307 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 LOC100509620A0A075B734 347 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 IGKV1-9A0A0C4DH69 117 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 C19orf67A6NJJ6 358 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 CAPZA1P52907 286 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 CXADRP78310 365 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 MPPED2Q15777 294 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 RAET1LQ5VY80 246 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 C11orf88Q6PI97 169 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 GLIPR1L1Q6UWM5 242 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 TMUB2Q71RG4 321 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 HDDC2Q7Z4H3 204 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 C12orf45Q8N5I9 185 aaPredicted RBP13.62□□□□□ -0.23
UPF3B-202ENST00000345865 ANGPTL6Q8NI99 470 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 GUCD1Q96NT3 240 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 IER2Q9BTL4 223 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 LPAR5Q9H1C0 372 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 ZNF160Q9HCG1 818 aa13.62□□□□□ -0.23
UPF3B-202ENST00000345865 CCL1P22362 96 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 FKBP2P26885 142 aaKnown RBP13.61□□□□□ -0.23
UPF3B-202ENST00000345865 S100A11P31949 105 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 SSR4P51571 173 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 MC2RQ01718 297 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 EXT1Q16394 746 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 RSPO4Q2I0M5 234 aaPredicted RBP13.61□□□□□ -0.23
UPF3B-202ENST00000345865 RSPO1Q2MKA7 263 aaPredicted RBP13.61□□□□□ -0.23
UPF3B-202ENST00000345865 COMMD7Q86VX2 200 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 ZNF101Q8IZC7 436 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 ZNF283Q8N7M2 679 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 OR2Y1Q8NGV0 311 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 OR10R2Q8NGX6 335 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 M1APQ8TC57 530 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 CCDC107Q8WV48 283 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 LYZL4Q96KX0 146 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 MYOZ1Q9NP98 299 aaPredicted RBP13.61□□□□□ -0.23
UPF3B-202ENST00000345865 FBLN5Q9UBX5 448 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 NCKAP5O14513 1909 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 A0A087WZY1 265 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 TRAV14DV4A0A0A6YYC5 116 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 YKT6O15498 198 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 WDPCPO95876 746 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 ZNF250P15622 560 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 HRH1P35367 487 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 SORDQ00796 357 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 RNASE10Q5GAN6 216 aaKnown RBP13.61□□□□□ -0.23
UPF3B-202ENST00000345865 PLAC9Q5JTB6 97 aa13.61□□□□□ -0.23
UPF3B-202ENST00000345865 CRIP3Q6Q6R5 217 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms