RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ZAR1Q86SH2 424 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 CENPSQ8N2Z9 138 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 MOGAT1Q96PD6 335 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 FXYD6Q9H0Q3 95 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 FGF20Q9NP95 211 aaPredicted RBP9.03□□□□□ -0.96
USP54-201ENST00000339859 PCDHGA9Q9Y5G4 932 aaKnown RBP9.03□□□□□ -0.96
USP54-201ENST00000339859 CALCBP10092 127 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 SELENOPP49908 381 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 RAB31Q13636 194 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 DEGS2Q6QHC5 323 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 OR4M1Q8NGD0 313 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 OR4Q3Q8NH05 313 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 ST8SIA4Q92187 359 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 HIPK2Q9H2X6 1198 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 A6NIN4 97 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 CREBL2O60519 120 aaPredicted RBP9.03□□□□□ -0.96
USP54-201ENST00000339859 CPEP16870 476 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 TGM4P49221 684 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 PPA2Q9H2U2 334 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 CACNG2Q9Y698 323 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 PCMT1P22061 227 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 F2RL1P55085 397 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 C17orf82Q86X59 251 aaPredicted RBP9.03□□□□□ -0.96
USP54-201ENST00000339859 OR10J5Q8NHC4 309 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 LGALS14Q8TCE9 139 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 PLA2G12AQ9BZM1 189 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 SDHAF2Q9NX18 166 aa9.03□□□□□ -0.96
USP54-201ENST00000339859 MEIS3P1A6NDR6 274 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 RECKO95980 971 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 NR4A2P43354 598 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 PEAR1Q5VY43 1037 aaPredicted RBP9.02□□□□□ -0.96
USP54-201ENST00000339859 SFRP4Q6FHJ7 346 aaPredicted RBP9.02□□□□□ -0.96
USP54-201ENST00000339859 OR2T2Q6IF00 324 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 TMEM179BQ7Z7N9 219 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 OR6Q1Q8NGQ2 317 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 HGDQ93099 445 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 SPSB1Q96BD6 273 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 KIRREL1Q96J84 757 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 PDCD1LG2Q9BQ51 273 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 POLE4Q9NR33 117 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 ZNF355PQ9NSJ1 428 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 TMEM38BQ9NVV0 291 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 PFDN2Q9UHV9 154 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 ITGB1BP2Q9UKP3 347 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 FOXJ3Q9UPW0 622 aa9.02□□□□□ -0.96
USP54-201ENST00000339859 TRGV10A0A0A0MS01 117 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 SOWAHCQ53LP3 525 aaPredicted RBP9.02□□□□□ -0.97
USP54-201ENST00000339859 HAGHLQ6PII5 290 aaPredicted RBP9.02□□□□□ -0.97
USP54-201ENST00000339859 TEX29Q8N6K0 151 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 OR8B3Q8NGG8 313 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 OR8B2Q96RD0 313 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 UCN2Q96RP3 112 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 MS4A5Q9H3V2 200 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 CLEC2DQ9UHP7 191 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 LTBP2Q14767 1821 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 IGLV3-12A0A075B6K2 115 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 SLC33A1O00400 549 aaPredicted RBP9.02□□□□□ -0.97
USP54-201ENST00000339859 BCAS1O75363 584 aaPredicted RBP9.02□□□□□ -0.97
USP54-201ENST00000339859 PLA2G2CQ5R387 149 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 MEX3BQ6ZN04 569 aaKnown RBP9.02□□□□□ -0.97
USP54-201ENST00000339859 CXorf67Q86X51 503 aaPredicted RBP9.02□□□□□ -0.97
USP54-201ENST00000339859 SMIM19Q96E16 107 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 THAP7Q9BT49 309 aaPredicted RBP9.02□□□□□ -0.97
USP54-201ENST00000339859 MAB21L1Q13394 359 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 POU4F3Q15319 338 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 CEBPEQ15744 281 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 TBRG1Q3YBR2 411 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 HRASLSQ9HDD0 168 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 CGGBP1Q9UFW8 167 aaPredicted RBP9.02□□□□□ -0.97
USP54-201ENST00000339859 NUP210Q8TEM1 1887 aaPredicted RBP9.02□□□□□ -0.97
USP54-201ENST00000339859 THADAQ6YHU6 1953 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 A0A0J9YW62 118 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 ZNF724A8MTY0 619 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 ZNF136P52737 540 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 HMGA2P52926 109 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 GABRG1Q8N1C3 465 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 OR4A16Q8NH70 328 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 FAM57AQ8TBR7 257 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 SLAMF9Q96A28 289 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 ZNF285Q96NJ3 590 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 DIRC2Q96SL1 478 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 CDCA4Q9BXL8 241 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 OR2H1Q9GZK4 316 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 NUBP2Q9Y5Y2 271 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 CHD5Q8TDI0 1954 aa9.02□□□□□ -0.97
USP54-201ENST00000339859 MTCL1Q9Y4B5 1905 aaKnown RBP9.01□□□□□ -0.97
USP54-201ENST00000339859 DHRS3O75911 302 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 SNRPBP14678 240 aaKnown RBP9.01□□□□□ -0.97
USP54-201ENST00000339859 ZNF416Q9BWM5 594 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 BEX2Q9BXY8 128 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 RIMS4Q9H426 269 aaPredicted RBP9.01□□□□□ -0.97
USP54-201ENST00000339859 BEX1Q9HBH7 125 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 PARD6AQ9NPB6 346 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 H3BMQ9 156 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 RER1O15258 196 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 UMODP07911 640 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 PPP5CP53041 499 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 CDK5R1Q15078 307 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 PCK2Q16822 640 aa9.01□□□□□ -0.97
USP54-201ENST00000339859 METAP1DQ6UB28 335 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms