RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PPP5D1E7EU14 171 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 TGFBR1P36897 503 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 CDC34P49427 236 aaPredicted RBP11.45□□□□□ -0.58
SDC3-201ENST00000336798 MEOX2P50222 304 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 SLC16A13Q7RTY0 426 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 SLC38A6Q8IZM9 456 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 CLDN22Q8N7P3 220 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 WDR31Q8NA23 367 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 CRYGNQ8WXF5 182 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 ARID1BQ8NFD5 2236 aaPredicted RBP11.45□□□□□ -0.58
SDC3-201ENST00000336798 FIGNL2A6NMB9 653 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 UMAD1C9J7I0 102 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 ZNF195O14628 629 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 NOVA1P51513 510 aaKnown RBP11.45□□□□□ -0.58
SDC3-201ENST00000336798 Q56UQ5 140 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 B3GNT9Q6UX72 402 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 CA13Q8N1Q1 262 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 OR2Z1Q8NG97 314 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 OR1J1Q8NGS3 322 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 NUDT9Q9BW91 350 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 ZDHHC5Q9C0B5 715 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 SYT5O00445 386 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 LRP3O75074 770 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 PDGFBP01127 241 aaPredicted RBP11.45□□□□□ -0.58
SDC3-201ENST00000336798 ZGLP1P0C6A0 271 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 SPINK2P20155 84 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 IGFBP6P24592 240 aaPredicted RBP11.45□□□□□ -0.58
SDC3-201ENST00000336798 ETV6P41212 452 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 SAXO2Q658L1 398 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 ACSM5Q6NUN0 579 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 SLC25A26Q70HW3 274 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 ZNF561Q8N587 486 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 ERGIC1Q969X5 290 aa11.45□□□□□ -0.58
SDC3-201ENST00000336798 TRDV1A0A1B0GX56 115 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 H3BP45 60 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 MKRN2OSH3BPM6 223 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 SLC25A4P12235 298 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 HRH1P35367 487 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 PCP4P48539 62 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 SYT14P1Q58G82 188 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 RGS7BPQ6MZT1 257 aaPredicted RBP11.44□□□□□ -0.58
SDC3-201ENST00000336798 ZNF620Q6ZNG0 422 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 RTN4RL1Q86UN2 441 aaPredicted RBP11.44□□□□□ -0.58
SDC3-201ENST00000336798 ZNF573Q86YE8 665 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 SIGLECL1Q8N7X8 197 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 TMEM102Q8N9M5 508 aaPredicted RBP11.44□□□□□ -0.58
SDC3-201ENST00000336798 PBOV1Q9GZY1 135 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 LTB4R2Q9NPC1 389 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 ARNTP27540 789 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 SDHAP31040 664 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 CCR9P51686 369 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 H3F3AP84243 136 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 THEM4Q5T1C6 240 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 RSPO2Q6UXX9 243 aaPredicted RBP11.44□□□□□ -0.58
SDC3-201ENST00000336798 OR2M7Q8NG81 312 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 C16orf52Q8NHV5 167 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 KISS1RQ969F8 398 aaPredicted RBP11.44□□□□□ -0.58
SDC3-201ENST00000336798 ADIPOR1Q96A54 375 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 PRO1933Q9H354 126 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 GAL3ST2Q9H3Q3 398 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 TMEM38AQ9H6F2 299 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 TMPRSS11DO60235 418 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 FGF7P21781 194 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 S100A4P26447 101 aaKnown RBP11.44□□□□□ -0.58
SDC3-201ENST00000336798 TCTN3Q6NUS6 607 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 ACOT7LQ6ZUV0 252 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 OR2T6Q8NHC8 308 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 RXFP4Q8TDU9 374 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 TMED6Q8WW62 240 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 SLC39A7Q92504 469 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 BTF3L4Q96K17 158 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 ALKBH3Q96Q83 286 aaPredicted RBP11.44□□□□□ -0.58
SDC3-201ENST00000336798 GFYI3L273 518 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 CRXO43186 299 aaPredicted RBP11.44□□□□□ -0.58
SDC3-201ENST00000336798 FCMRO60667 390 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 ARHGEF39Q8N4T4 335 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 NANOGP1Q8N7R0 232 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 MAFAQ8NHW3 353 aaPredicted RBP11.44□□□□□ -0.58
SDC3-201ENST00000336798 MISP3Q96FF7 219 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 ZNF251Q9BRH9 671 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 CTDSP1Q9GZU7 261 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 C12orf10Q9HB07 376 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 CLEC1BQ9P126 229 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 NUP188Q5SRE5 1749 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 CD22P20273 847 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 OR2B8PP59922 312 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 TMEM88Q6PEY1 159 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 OR11G2Q8NGC1 345 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 OR52N1Q8NH53 320 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 SCARB1Q8WTV0 552 aa11.44□□□□□ -0.58
SDC3-201ENST00000336798 ZNF727A8MUV8 499 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 C2CD4DB7Z1M9 353 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 H3BMH7 237 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 ABLIM3O94929 683 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 SRP14P37108 136 aaKnown RBP11.43□□□□□ -0.58
SDC3-201ENST00000336798 ZNF83P51522 516 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 TAS2R45P59539 299 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 OR5M8Q8NGP6 311 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 OR13D1Q8NGV5 346 aa11.43□□□□□ -0.58
SDC3-201ENST00000336798 POM121Q96HA1 1249 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms