RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TPD52L2O43399 206 aaKnown RBP13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 NCR1O76036 304 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 IGHV1-46P01743 117 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 DAOP14920 347 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 SELEP16581 610 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 LIPAP38571 399 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 CAPGP40121 348 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 RIDAP52758 137 aaKnown RBP13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 CCL8P80075 99 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 TIGD6Q17RP2 521 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 GFOD2Q3B7J2 385 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 PCGF3Q3KNV8 242 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 ZMAT1Q5H9K5 638 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 DEGS2Q6QHC5 323 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 SSX6Q7RTT6 188 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 PRSS45Q7RTY3 260 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 SETD9Q8NE22 299 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 OR10A2Q9H208 303 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 AMBNQ9NP70 447 aa13.55□□□□□ -0.24
CCDC28A-201ENST00000332797 H0YAE9 185 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 XRCC2O43543 280 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF254O75437 659 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 ATP6V1G2O95670 118 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 HPXP02790 462 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 CSF3P09919 207 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 DBTP11182 482 aaKnown RBP13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 PDLIM4P50479 330 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 DSCR9P59020 149 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 EGR3Q06889 387 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 TNK1Q13470 666 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 Q6ZR03 302 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 DNM1P46Q6ZS02 220 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 OR52H1Q8NGJ2 320 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 CNIH3Q8TBE1 160 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 UBASH3BQ8TF42 649 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 FAM168AQ92567 244 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 REEP6Q96HR9 211 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 RHNO1Q9BSD3 238 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 MYOZ1Q9NP98 299 aaPredicted RBP13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 DECR2Q9NUI1 292 aa13.54□□□□□ -0.24
CCDC28A-201ENST00000332797 IGHV4-30-2A0A087WSY4 118 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 TMEM269A0A1B0GVZ9 245 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 GGT3PA6NGU5 568 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 IQCF6A8MYZ5 107 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 LYNX1G3V0Z9 82 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 LILRA1O75019 489 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 WBP4O75554 376 aaKnown RBP13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 KRT8P05787 483 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 LYNX1P0DP58 116 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 AQP4P55087 323 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 ACTC1P68032 377 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 ACTA1P68133 377 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 IL18R1Q13478 541 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF829Q3KNS6 432 aaPredicted RBP13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 PLEKHG7Q6ZR37 379 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 YIPF7Q8N8F6 280 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 OR8G5Q8NG78 346 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 OR2Z1Q8NG97 314 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 SPRYD4Q8WW59 207 aaPredicted RBP13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 LGALS12Q96DT0 336 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 ELMOD3Q96FG2 381 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 REPIN1Q9BWE0 567 aaKnown RBP13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 VCX3BQ9H321 246 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 OPA3Q9H6K4 179 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 FAM206AQ9NX38 181 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 NKIRAS2Q9NYR9 191 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 ZNF319Q9P2F9 582 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 MRM2Q9UI43 246 aaKnown RBP13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 ZDHHC8Q9ULC8 765 aa13.53□□□□□ -0.24
CCDC28A-201ENST00000332797 CD300LBA8K4G0 201 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 GNAO1P09471 354 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 DCTDP32321 178 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 ZNF85Q03923 595 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 MFGE8Q08431 387 aaPredicted RBP13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 CDK5R2Q13319 367 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 RIPK1Q13546 671 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 SMN1Q16637 294 aaKnown RBP13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 FAM209AQ5JX71 171 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 C8orf59Q8N0T1 100 aaPredicted RBP13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 OR8B12Q8NGG6 310 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 C10orf105Q8TEF2 133 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 SPSB4Q96A44 273 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 SGK3Q96BR1 496 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 DIRC2Q96SL1 478 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 SAP30LQ9HAJ7 183 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 GTF2A1LQ9UNN4 478 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 EXOGQ9Y2C4 368 aaKnown RBP13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 RPL36Q9Y3U8 105 aaKnown RBP13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 HIVEP1P15822 2718 aa13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 FLNAP21333 2647 aaKnown RBP13.52□□□□□ -0.25
CCDC28A-201ENST00000332797 LOC390937A0A1W2PQ73 354 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 DAPL1A0PJW8 107 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 H7C1Q1 480 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 J3QRE1 110 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 RPP14O95059 124 aaKnown RBP13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 ADH4P08319 380 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 CD99P14209 185 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 TNFSF4P23510 183 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 ISL1P61371 349 aa13.51□□□□□ -0.25
CCDC28A-201ENST00000332797 TNFAIP6P98066 277 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms