RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 XRCC2O43543 280 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 MRPL3P09001 348 aaKnown RBP11.9□□□□□ -0.5
LIMS1-201ENST00000332345 TACSTD2P09758 323 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 SLC2A1P11166 492 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 CHN2P52757 468 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 HCCSP53701 268 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 ZNF92Q03936 586 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 SLC3A1Q07837 685 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 TMEM249Q2WGJ8 235 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 CYB5R2Q6BCY4 276 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 Q6ZR03 302 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 Q71RC1 249 aaPredicted RBP11.9□□□□□ -0.5
LIMS1-201ENST00000332345 KRT77Q7Z794 578 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 CCL17Q92583 94 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 AMELYQ99218 206 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 SLC30A2Q9BRI3 323 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 MROQ9BYG7 248 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 SLC22A4Q9H015 551 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 DNAJC27Q9NZQ0 273 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 NOP16Q9Y3C1 178 aaKnown RBP11.9□□□□□ -0.5
LIMS1-201ENST00000332345 ZANQ9Y493 2812 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 TLN2Q9Y4G6 2542 aa11.9□□□□□ -0.5
LIMS1-201ENST00000332345 ZFHX3Q15911 3703 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 IGHV4-61A0A0C4DH41 118 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 PHYHO14832 338 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 TBX1O43435 398 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 ZNF254O75437 659 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 RP2O75695 350 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 CFL1P23528 166 aaKnown RBP11.89□□□□□ -0.51
LIMS1-201ENST00000332345 HTR1FP30939 366 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 ATP6V1E1P36543 226 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 DDOSTP39656 456 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 GZMKP49863 264 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 ZNF121P58317 390 aaPredicted RBP11.89□□□□□ -0.51
LIMS1-201ENST00000332345 POU4F2Q12837 409 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 TMED1Q13445 227 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 TIGD6Q17RP2 521 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 GLYATL3Q5SZD4 288 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 LRRN1Q6UXK5 716 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 PEG10Q86TG7 708 aaKnown RBP11.89□□□□□ -0.51
LIMS1-201ENST00000332345 BHLHE23Q8NDY6 225 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 FAM81AQ8TBF8 368 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 HPS1Q92902 700 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 RAB1CQ92928 201 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 TIMD4Q96H15 378 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 PGAM5Q96HS1 289 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 SLC29A1Q99808 456 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 OR10A2Q9H208 303 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 BRD7Q9NPI1 651 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 DYSFO75923 2080 aa11.89□□□□□ -0.51
LIMS1-201ENST00000332345 HIVEP2P31629 2446 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 ACOD1A6NK06 481 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 CD300LBA8K4G0 201 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 CLDN25C9JDP6 229 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 ZNF670-ZNF695F2Z2N8 137 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 CD5LO43866 347 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 LILRA1O75019 489 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 SBK2P0C263 348 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 DCTDP32321 178 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 SRP9P49458 86 aaKnown RBP11.88□□□□□ -0.51
LIMS1-201ENST00000332345 SLC25A30Q5SVS4 291 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 MEDAGQ5VYS4 303 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 FAM57BQ71RH2 274 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 SLC35F2Q8IXU6 374 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 ZNF679Q8IYX0 411 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 OR2AE1Q8NHA4 323 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 SPSB4Q96A44 273 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 SGK3Q96BR1 496 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 OR2V2Q96R30 315 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 RGCCQ9H4X1 137 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 ADGRL4Q9HBW9 690 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 C8orf4Q9NR00 106 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 CLN6Q9NWW5 311 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.88□□□□□ -0.51
LIMS1-201ENST00000332345 PPP1R3CQ9UQK1 317 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 KLHDC2Q9Y2U9 406 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 LRP12Q9Y561 859 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 GMPPBQ9Y5P6 360 aa11.88□□□□□ -0.51
LIMS1-201ENST00000332345 A0A1B0GWJ7 208 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 LRP5LA4QPB2 252 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 SNTNA6NMZ2 147 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 ANKRD65E5RJM6 399 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 E9PQ18 207 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 IFNL4K9M1U5 179 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 GMDSO60547 372 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 OR2T7P0C7T2 308 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 IGHV4-31P0DP07 118 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 ANPEPP15144 967 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 RIDAP52758 137 aaKnown RBP11.87□□□□□ -0.51
LIMS1-201ENST00000332345 CXCR4P61073 352 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 SNRPGP62308 76 aaKnown RBP11.87□□□□□ -0.51
LIMS1-201ENST00000332345 ROM1Q03395 351 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 EGR3Q06889 387 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 TRIP10Q15642 601 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 SNCBQ16143 134 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 PRSS45Q7RTY3 260 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 OR51G2Q8NGK0 314 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 OR2T27Q8NH04 317 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 ITLN1Q8WWA0 313 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 UBE2FQ969M7 185 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms