RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 MIDNQ504T8 468 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 ACTBL2Q562R1 376 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 PRSS54Q6PEW0 395 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 ST7LQ8TDW4 575 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 OR8B4Q96RC9 309 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 CNTD2Q9H8S5 307 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 PILRAQ9UKJ1 303 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 EMC9Q9Y3B6 208 aa12.02□□□□□ -0.49
CCDC88C-201ENST00000331194 ZNF727A8MUV8 499 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 CYR61O00622 381 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 SMIM10L1P0DMW3 83 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 DNASE1L1P49184 302 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 EGR3Q06889 387 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 ZNF616Q08AN1 781 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 UNC119Q13432 240 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 PDGFRLQ15198 375 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 GRASPQ7Z6J2 395 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 SLC43A2Q8N370 569 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 OR13C3Q8NGS6 347 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 BSCL2Q96G97 398 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 SMIM10Q96HG1 83 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 TEX101Q9BY14 249 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 GDE1Q9NZC3 331 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 TBC1D29Q9UFV1 150 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 FBXO7Q9Y3I1 522 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 PCNX3Q9H6A9 2034 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 CEACAM5P06731 702 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 HEXBP07686 556 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 SPCS3P61009 180 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 LILRA6Q6PI73 481 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 TMEM184AQ6ZMB5 413 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 CCL4L1Q8NHW4 92 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 ANKRD9Q96BM1 317 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 ZNF587Q96SQ5 575 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 PTGES2Q9H7Z7 377 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 HIF3AQ9Y2N7 669 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 KPTNQ9Y664 436 aa12.01□□□□□ -0.49
CCDC88C-201ENST00000331194 HCRTR1O43613 425 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 ZNF354AO60765 605 aaPredicted RBP12□□□□□ -0.49
CCDC88C-201ENST00000331194 ADH1CP00326 375 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 CX3CR1P49238 355 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 SULT1A2P50226 295 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 RPS15AP62244 130 aaKnown RBP12□□□□□ -0.49
CCDC88C-201ENST00000331194 SUPT4H1P63272 117 aaKnown RBP12□□□□□ -0.49
CCDC88C-201ENST00000331194 OR10D4PQ8NGN7 298 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 OR4K15Q8NH41 348 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 IGFLR1Q9H665 355 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 MMP25Q9NPA2 562 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 PISDQ9UG56 409 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 EDDM13A0A1B0GTR0 161 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 SDCBPO00560 298 aaPredicted RBP12□□□□□ -0.49
CCDC88C-201ENST00000331194 TSPAN15O95858 294 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 CA3P07451 260 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 LINC00271P0C7V0 271 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 DRD3P35462 400 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 ZP2Q05996 745 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 CD226Q15762 336 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 LCN10Q6JVE6 187 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 CTHRC1Q96CG8 243 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 RSPRY1Q96DX4 576 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 AQP10Q96PS8 301 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 TAAR9Q96RI9 348 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 GPX7Q96SL4 187 aaPredicted RBP12□□□□□ -0.49
CCDC88C-201ENST00000331194 PRDM13Q9H4Q3 707 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 MRPL22Q9NWU5 206 aaKnown RBP12□□□□□ -0.49
CCDC88C-201ENST00000331194 UMAD1C9J7I0 102 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 TCAPO15273 167 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 FOXS1O43638 330 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 HKR1P10072 659 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 IGFBP3P17936 291 aaPredicted RBP12□□□□□ -0.49
CCDC88C-201ENST00000331194 S1PR1P21453 382 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 GLRA1P23415 457 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 GUK1Q16774 197 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 TMEM240Q5SV17 173 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 CDCP2Q5VXM1 449 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 COX15Q7KZN9 410 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 OR52N4Q8NGI2 321 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 MAFIPQ8WZ33 124 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 ZBP1Q9H171 429 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 IL23AQ9NPF7 189 aa12□□□□□ -0.49
CCDC88C-201ENST00000331194 PUS1Q9Y606 427 aaKnown RBP eCLIP12□□□□□ -0.49
CCDC88C-201ENST00000331194 SERINC4A6NH21 518 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 H0YGG7 62 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 SLC16A7O60669 478 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 ADH1AP07327 375 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 CFPP27918 469 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 ARF3P61204 181 aaPredicted RBP11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 ZNF343Q6P1L6 599 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 SPNS3Q6ZMD2 512 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 HOGA1Q86XE5 327 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 TGIF2LXQ8IUE1 241 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 ZNF679Q8IYX0 411 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 RNASE11Q8TAA1 199 aaKnown RBP11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 TAAR8Q969N4 342 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 RAB11FIP5Q9BXF6 653 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 SMOC1Q9H4F8 434 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 FBXL17Q9UF56 701 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 LRP12Q9Y561 859 aa11.99□□□□□ -0.49
CCDC88C-201ENST00000331194 URGCP-MRPS24S4R325 110 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms