RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SNAI2O43623 268 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 AIREO43918 545 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 SOX15O60248 233 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 SS18L1O75177 396 aaPredicted RBP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 SUPT3HO75486 399 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 CCNB2O95067 398 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 NPPAP01160 153 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 FGGP02679 453 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 PRB2P02812 416 aaPredicted RBP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 CLTAP09496 248 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 ZDHHC11BP0C7U3 371 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 RORAP35398 523 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 TFPI2P48307 235 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 CX3CR1P49238 355 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 PPOXP50336 477 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 CCR6P51684 374 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 CRISP3P54108 245 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 FGF8P55075 233 aaPredicted RBP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 GPX6P59796 221 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 YWHAGP61981 247 aaKnown RBP eCLIP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 RAD51Q06609 339 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 FZD2Q14332 565 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 GGTLC2Q14390 218 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 TMEM183BQ1AE95 376 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 BEX5Q5H9J7 111 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 LIN9Q5TKA1 542 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 MLIPQ5VWP3 458 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 AP1ARQ63HQ0 302 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 CNIH2Q6PI25 160 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 CERS6Q6ZMG9 384 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 TMEM183AQ8IXX5 376 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 C10orf67Q8IYJ2 551 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 IQCKQ8N0W5 287 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 OR5T3Q8NGG3 340 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 OR2G2Q8NGZ5 317 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 OR52E5Q8NH55 327 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 LILRB4Q8NHJ6 448 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 CD300LFQ8TDQ1 290 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 RAB1CQ92928 201 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 AURKBQ96GD4 344 aaPredicted RBP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 TAAR1Q96RJ0 339 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 LZTS2Q9BRK4 669 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 IFI27L2Q9H2X8 130 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 CDC42EP4Q9H3Q1 356 aaKnown RBP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 CWH43Q9H720 699 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 TMEM165Q9HC07 324 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 RBAKQ9NYW8 714 aaPredicted RBP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF223Q9UK11 482 aaPredicted RBP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 BZW2Q9Y6E2 419 aaKnown RBP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 USP34Q70CQ2 3546 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 KDM3BQ7LBC6 1761 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 GCN1Q92616 2671 aaKnown RBP2.1□□□□□ -2.07
HMGB1-201ENST00000326004 SLX4Q8IY92 1834 aa2.1□□□□□ -2.07
HMGB1-201ENST00000326004 DAPK1P53355 1430 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 HTTP42858 3142 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 ALPK3Q96L96 1907 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 COL1A1P02452 1464 aaPredicted RBP2.09□□□□□ -2.07
HMGB1-201ENST00000326004 IGLV11-55A0A075B6I3 123 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 A0A096LNJ9 63 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 A0A0B4J2A0 478 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 LOC100506127A0A0U1RQW1 187 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 LOC100653049A0A140TA62 436 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 PRSS37A4D1T9 235 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF99A8MXY4 864 aaPredicted RBP2.09□□□□□ -2.07
HMGB1-201ENST00000326004 ERVV-1B6SEH8 477 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 M0R3G1 203 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 ZBTB5O15062 677 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 SIVA1O15304 175 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 CHMP2AO43633 222 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 EIF4E2O60573 245 aaKnown RBP2.09□□□□□ -2.07
HMGB1-201ENST00000326004 FCN3O75636 299 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 KRT34O76011 436 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 CLPXO76031 633 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 SCELO95171 688 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 BGLAPP02818 100 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF32P17041 273 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 OMGP23515 440 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 FOXN2P32314 431 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 LONP1P36776 959 aaKnown RBP2.09□□□□□ -2.07
HMGB1-201ENST00000326004 NBL1P41271 181 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 CXCL5P42830 114 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 SLC1A1P43005 524 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 CRISP1P54107 249 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 CLDN18P56856 261 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 HMGCS1Q01581 520 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 AQP6Q13520 282 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 GUCA2BQ16661 112 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 ZNF829Q3KNS6 432 aaPredicted RBP2.09□□□□□ -2.07
HMGB1-201ENST00000326004 KRTAP13-3Q3SY46 172 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 Q3ZCU0 254 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 ZBED5Q49AG3 693 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 TFDP3Q5H9I0 405 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 HHATQ5VTY9 493 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 STUMQ69YW2 141 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 LYPD2Q6UXB3 125 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 MRPL21Q7Z2W9 205 aaKnown RBP2.09□□□□□ -2.07
HMGB1-201ENST00000326004 HDDC2Q7Z4H3 204 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 THOC6Q86W42 341 aaKnown RBP2.09□□□□□ -2.07
HMGB1-201ENST00000326004 SAXO1Q8IYX7 474 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 CMTM1Q8IZ96 169 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms