RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 CRISPLD2Q9H0B8 497 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 CTSFQ9UBX1 484 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 ANKRD36A6QL64 1941 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 SRCAPQ6ZRS2 3230 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 FKBP2P26885 142 aaKnown RBP13.24□□□□□ -0.29
TCOF1-201ENST00000323668 GPR3P46089 330 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 RPL19P84098 196 aaKnown RBP13.24□□□□□ -0.29
TCOF1-201ENST00000323668 FUT7Q11130 342 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 SLC16A14Q7RTX9 510 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 P4HA3Q7Z4N8 544 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 OR14K1Q8NGZ2 314 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 C14orf79Q96F83 325 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 PHYHIPLQ96FC7 376 aa13.24□□□□□ -0.29
TCOF1-201ENST00000323668 PARP12Q9H0J9 701 aaKnown RBP13.24□□□□□ -0.29
TCOF1-201ENST00000323668 SLC33A1O00400 549 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-201ENST00000323668 CFDP00746 253 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-201ENST00000323668 MSR1P21757 451 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 RNF4P78317 190 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 PHLDA2Q53GA4 152 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 ZNF2Q9BSG1 426 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-201ENST00000323668 LRFN1Q9P244 771 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 CNOT4O95628 575 aaKnown RBP13.23□□□□□ -0.29
TCOF1-201ENST00000323668 RPS18P62269 152 aaKnown RBP13.23□□□□□ -0.29
TCOF1-201ENST00000323668 USF2Q15853 346 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-201ENST00000323668 ETFDHQ16134 617 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 LILRB2Q8N423 598 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 BPIFCQ8NFQ6 507 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 UQCC2Q9BRT2 126 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 ZNF768Q9H5H4 540 aaKnown RBP13.23□□□□□ -0.29
TCOF1-201ENST00000323668 LDAHQ9H6V9 325 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 NECAP2Q9NVZ3 263 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 PADI1Q9ULC6 663 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 WASF3Q9UPY6 502 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 DTX4Q9Y2E6 619 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 SPAG17Q6Q759 2223 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 IGHV5-51A0A0C4DH38 117 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 IGKV1D-16P01601 117 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 RPL12P30050 165 aaKnown RBP13.23□□□□□ -0.29
TCOF1-201ENST00000323668 FCGR2CP31995 323 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 SRYQ05066 204 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 NR0B2Q15466 257 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 CEBPEQ15744 281 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 TUSC1Q2TAM9 212 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 AAED1Q7RTV5 226 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 OR9K2Q8NGE7 335 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 NAT6Q93015 286 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 NDRG3Q9UGV2 375 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 C9orf170A2RU37 121 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 PHF1O43189 567 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-201ENST00000323668 JMJD7P0C870 316 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 CXCL2P19875 107 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 KISS1RQ969F8 398 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-201ENST00000323668 SLC25A38Q96DW6 304 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 MRGPRX4Q96LA9 322 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 SGCZQ96LD1 299 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 TSC2P49815 1807 aa13.23□□□□□ -0.29
TCOF1-201ENST00000323668 KNTC1P50748 2209 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 NSG1A0A0A6YYJ2 146 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 CCDC163A0A0D9SF12 145 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 G3V3Y1 287 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 MPC2O95563 127 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 GLI4P10075 376 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 ZNF121P58317 390 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-201ENST00000323668 RPL23AP62750 156 aaKnown RBP13.22□□□□□ -0.29
TCOF1-201ENST00000323668 SRPXP78539 464 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 FOXF1Q12946 379 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 MRPL49Q13405 166 aaKnown RBP13.22□□□□□ -0.29
TCOF1-201ENST00000323668 RBM39Q14498 530 aaKnown RBP13.22□□□□□ -0.29
TCOF1-201ENST00000323668 SEH1LQ96EE3 360 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 OR5B12Q96R08 314 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 PILRAQ9UKJ1 303 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 FTCDNL1E5RQL4 147 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 BET1O15155 118 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 ST8SIA3O43173 380 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 ATPAF1Q5TC12 328 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-201ENST00000323668 TMEM92Q6UXU6 159 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 ZFP82Q8N141 532 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 SLC38A9Q8NBW4 561 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 MSTNO14793 375 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 MPZL1O95297 269 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 RPS4Y1P22090 263 aaKnown RBP13.22□□□□□ -0.29
TCOF1-201ENST00000323668 CXCL12P48061 93 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 EFNB2P52799 333 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 SUMO3P55854 103 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-201ENST00000323668 CLINT1Q14677 625 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 LAMTOR1Q6IAA8 161 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 DGAT2L6Q6ZPD8 337 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 LRRTM1Q86UE6 522 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 LHFPL5Q8TAF8 219 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 NXT1Q9UKK6 140 aaKnown RBP13.22□□□□□ -0.29
TCOF1-201ENST00000323668 LMO7DNF2Z398 122 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 PIN1P1O15428 100 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 ITGB2P05107 769 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 ABOP16442 354 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 FOLR3P41439 243 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 PNLIPRP3Q17RR3 467 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 ZNF684Q5T5D7 378 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 Q6ZRG5 221 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 SPRED2Q7Z698 418 aa13.22□□□□□ -0.29
TCOF1-201ENST00000323668 WDR5BQ86VZ2 330 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms