RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 A6NNC1 897 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 ERBB2P04626 1255 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 SNRPBP14678 240 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 GPX2P18283 190 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 HOXC13P31276 330 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 CLDN12P56749 244 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 PAX2Q02962 417 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 C9orf50Q5SZB4 431 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 WDR5BQ86VZ2 330 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 MEX3DQ86XN8 651 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 MTMR14Q8NCE2 650 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 ORAOV1Q8WV07 137 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 ROBO4Q8WZ75 1007 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 MYH15Q9Y2K3 1946 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 KIF1BO60333 1816 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM272A0A1B0GTI8 110 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 NKX6-3A6NJ46 265 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM200CA6NKL6 621 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 YDJCA8MPS7 323 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 VWC2LB2RUY7 222 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 APCSP02743 223 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 FDX1P10109 184 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF766Q5HY98 468 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 WNT5BQ9H1J7 359 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 FCF1Q9Y324 198 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 FAM157AC9JC47 383 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM262E9PQX1 116 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 MASP2O00187 686 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 FSCN2O14926 492 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 FGF10O15520 208 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 TSPAN12O95859 305 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 GPR183P32249 361 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 MTNR1AP48039 350 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 CTXN1P60606 82 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 HBBP68871 147 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 EVX2Q03828 476 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 CACNG1Q06432 222 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM64Q6YI46 380 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 NR2C2APQ86WQ0 139 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 KRTCAP2Q8N6L1 136 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 OSMRQ99650 979 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 EBF4Q9BQW3 602 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 PCGF1Q9BSM1 259 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC7A7Q9UM01 511 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 KDM4FA0A1W2PPD8 638 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM189A5PLL7 270 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 TMEM189-UBE2V1I3L0A0 370 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC25A20O43772 301 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 C8GP07360 202 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 CXCL8P10145 99 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 NDUFB7P17568 137 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 DUSP1P28562 367 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 PIGAP37287 484 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 SEC11AP67812 179 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 SDHAF4Q5VUM1 108 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 ADGRG5Q8IZF4 528 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF687Q8N1G0 1237 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC29A3Q9BZD2 475 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 CBLN4Q9NTU7 201 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 V9GY05 133 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 A0A1W2PR48 441 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 GALR2O43603 387 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 LSM8O95777 96 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 ELAVL4P26378 380 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 ATP5IP56385 69 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 UFM1P61960 85 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 FPGSQ05932 587 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 MICAQ29983 383 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 XKR7Q5GH72 579 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 FAM182AQ5T1J6 154 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 WBP2NLQ6ICG8 309 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF770Q6IQ21 691 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 SH3RF2Q8TEC5 729 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 C10orf82Q8WW14 230 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 PRELID3AQ96N28 172 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 PSENENQ9NZ42 101 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 SS18L2Q9UHA2 77 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 ANXA10Q9UJ72 324 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 FZD10Q9ULW2 581 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 CNTNAP1P78357 1384 aa6.97□□□□□ -1.29
LIMCH1-201ENST00000313860 NPHP4O75161 1426 aaPredicted RBP6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 TRAV8-1A0A0A6YYK1 113 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 RBMY1BA6NDE4 496 aaKnown RBP6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 RBMY1EA6NEQ0 496 aaKnown RBP6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 RRHO14718 337 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 SNAI2O43623 268 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 NXPH2O95156 264 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 RBMY1DP0C7P1 496 aaKnown RBP6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 RBMY1A1P0DJD3 496 aaKnown RBP6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 RBMY1CP0DJD4 496 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 ID4P47928 161 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 CISD2Q8N5K1 135 aaKnown RBP6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 MS4A15Q8N5U1 240 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF511Q8NB15 262 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 PHOSPHO2Q8TCD6 241 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 ELOVL5Q9NYP7 299 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 TTC24A2A3L6 582 aaPredicted RBP6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 ERHP84090 104 aaKnown RBP6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 OLIG2Q13516 323 aa6.96□□□□□ -1.29
LIMCH1-201ENST00000313860 CD276Q5ZPR3 534 aa6.96□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms