RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 FPR2P25090 351 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 CDKN2AP42771 156 aaKnown RBP17.43■□□□□ 0.38
USP48-201ENST00000308271 FABP9Q0Z7S8 132 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 UBE3DQ7Z6J8 389 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 FBXO34Q9NWN3 711 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 KLF15Q9UIH9 416 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 HS3ST3A1Q9Y663 406 aa17.43■□□□□ 0.38
USP48-201ENST00000308271 RD3LP0DJH9 198 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 ST6GAL1P15907 406 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 TMEM41BQ5BJD5 291 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 ATPAF1Q5TC12 328 aaPredicted RBP17.42■□□□□ 0.38
USP48-201ENST00000308271 AADACL3Q5VUY0 350 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 ASH2LQ9UBL3 628 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 TMEM184BQ9Y519 407 aaPredicted RBP17.42■□□□□ 0.38
USP48-201ENST00000308271 PPP5D1E7EU14 171 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 HLA-HP01893 362 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 EIF1P41567 113 aaKnown RBP17.42■□□□□ 0.38
USP48-201ENST00000308271 RPP30P78346 268 aaKnown RBP17.42■□□□□ 0.38
USP48-201ENST00000308271 PRSS54Q6PEW0 395 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 FAM174AQ8TBP5 190 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 PRRX2Q99811 253 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 POMT1Q9Y6A1 747 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 OR5H8P0DN80 308 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 KCNAB1Q14722 419 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 THEM4Q5T1C6 240 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 KIAA0895LQ68EN5 471 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 OR11H4Q8NGC9 324 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 GPX8Q8TED1 209 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 FAM96BQ9Y3D0 163 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 CFDP00746 253 aaPredicted RBP17.42■□□□□ 0.38
USP48-201ENST00000308271 RFC3P40938 356 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 SHEQ5VZ18 495 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 PLXDC2Q6UX71 529 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 RASL12Q9NYN1 266 aa17.42■□□□□ 0.38
USP48-201ENST00000308271 A0A1B0GTH9 108 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 ICOSLGO75144 302 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 SMIM6P0DI80 62 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 PPIAP62937 165 aaKnown RBP17.41■□□□□ 0.38
USP48-201ENST00000308271 ETFDHQ16134 617 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 TMEM164Q5U3C3 297 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 ZNF251Q9BRH9 671 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 MRM2Q9UI43 246 aaKnown RBP17.41■□□□□ 0.38
USP48-201ENST00000308271 RNF212BA8MTL3 300 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 CEBPZOSA8MTT3 80 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 MBTPS2O43462 519 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 TMEM215Q68D42 235 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 SLC16A14Q7RTX9 510 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 CBLN2Q8IUK8 224 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 OR51A2Q8NGJ7 313 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 OR6S1Q8NH40 331 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 PHOSPHO2Q8TCD6 241 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 SEC11CQ9BY50 192 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 CTSFQ9UBX1 484 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 F5P12259 2224 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 RAB27BO00194 218 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 HYAL3O43820 417 aaPredicted RBP17.41■□□□□ 0.38
USP48-201ENST00000308271 EIF1BO60739 113 aaKnown RBP17.41■□□□□ 0.38
USP48-201ENST00000308271 SFT2D2O95562 160 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 H3F3AP84243 136 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 OR13H1Q8NG92 308 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 OR4C3Q8NH37 302 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 STT3BQ8TCJ2 826 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 KTI12Q96EK9 354 aaPredicted RBP17.41■□□□□ 0.38
USP48-201ENST00000308271 ALX4Q9H161 411 aaPredicted RBP17.41■□□□□ 0.38
USP48-201ENST00000308271 ST6GALNAC2Q9UJ37 374 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 CCDC88CQ9P219 2028 aa17.41■□□□□ 0.38
USP48-201ENST00000308271 BTBD17A6NE02 478 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 PRAMEF25A6NGN4 478 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 FIGNL2A6NMB9 653 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 SERPINE3A8MV23 424 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 GLI4P10075 376 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 SLC25A43Q8WUT9 341 aaPredicted RBP17.4■□□□□ 0.38
USP48-201ENST00000308271 PATE1Q8WXA2 126 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 ST8SIA1Q92185 356 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 H0Y8X5 98 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 CD38P28907 300 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 PSMB3P49720 205 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 FBXO46Q6PJ61 603 aaPredicted RBP17.4■□□□□ 0.38
USP48-201ENST00000308271 SEMA6DQ8NFY4 1073 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 OR11G2Q8NGC1 345 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 CCL4L1Q8NHW4 92 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 NKX3-1Q99801 234 aaPredicted RBP17.4■□□□□ 0.38
USP48-201ENST00000308271 ZNF107Q9UII5 783 aaPredicted RBP17.4■□□□□ 0.38
USP48-201ENST00000308271 ARID2Q68CP9 1835 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 H7BYZ3 331 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 MIDNQ504T8 468 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 RTN4IP1Q8WWV3 396 aaPredicted RBP17.4■□□□□ 0.38
USP48-201ENST00000308271 GDF2Q9UK05 429 aaPredicted RBP17.4■□□□□ 0.38
USP48-201ENST00000308271 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.4■□□□□ 0.38
USP48-201ENST00000308271 MFSD2BA6NFX1 497 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 ANKRD34CP0C6C1 535 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 FAM53BQ14153 422 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 ZNF345Q14585 488 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 PRICKLE4Q2TBC4 344 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 Q5BKY6 102 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 TAAR8Q969N4 342 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 SDSLQ96GA7 329 aa17.4■□□□□ 0.38
USP48-201ENST00000308271 LTBP4Q8N2S1 1624 aa17.39■□□□□ 0.38
USP48-201ENST00000308271 CD1AP06126 327 aa17.39■□□□□ 0.37
USP48-201ENST00000308271 NANOS1Q8WY41 292 aaKnown RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms