RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 LTC4SQ16873 150 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.62□□□□□ -0.55
COL3A1-201ENST00000304636 BTNL8Q6UX41 500 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 HGDQ93099 445 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 OR6C1Q96RD1 312 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 TMPRSS5Q9H3S3 457 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 RAB18Q9NP72 206 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 SHROOM3Q8TF72 1996 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 H0YIG0 161 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 MBP02144 154 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 GUK1Q16774 197 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 OR13D1Q8NGV5 346 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 OR2AE1Q8NHA4 323 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 LHX4Q969G2 390 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 MICAL3Q7RTP6 2002 aa11.62□□□□□ -0.55
COL3A1-201ENST00000304636 GLAP06280 429 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 PTHLHP12272 177 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 SNRPEP62304 92 aaKnown RBP11.61□□□□□ -0.55
COL3A1-201ENST00000304636 IFITM3Q01628 133 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 B3GNTL1Q67FW5 361 aaPredicted RBP11.61□□□□□ -0.55
COL3A1-201ENST00000304636 OR4F5Q8NH21 305 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 OR4F4Q96R69 305 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 BARHL1Q9BZE3 327 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 COL18A1P39060 1754 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 M0R135 149 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 ZFPL1O95159 310 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 DTYMKP23919 212 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 KCNJ3P48549 501 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 SELENOPP49908 381 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 TOMM34Q15785 309 aaPredicted RBP11.61□□□□□ -0.55
COL3A1-201ENST00000304636 DBX2Q6ZNG2 339 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 H2BFWTQ7Z2G1 175 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.61□□□□□ -0.55
COL3A1-201ENST00000304636 BVESQ8NE79 360 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 EVPLQ92817 2033 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 ZNF799Q96GE5 643 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 SMIM7Q9BQ49 75 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 ACTR3CQ9C0K3 210 aaPredicted RBP11.61□□□□□ -0.55
COL3A1-201ENST00000304636 NXF2Q9GZY0 626 aaKnown RBP11.61□□□□□ -0.55
COL3A1-201ENST00000304636 PLA2G10O15496 165 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 CTAG2O75638 210 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 GUSBP08236 651 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 SULT1A3P0DMM9 295 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 SULT1A4P0DMN0 295 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 OPRM1P35372 400 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 ARG2P78540 354 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 BTG2P78543 158 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 C4orf17Q53FE4 359 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 NHLRC1Q6VVB1 395 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 THNSL2Q86YJ6 484 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 TRAF4Q9BUZ4 470 aaPredicted RBP11.61□□□□□ -0.55
COL3A1-201ENST00000304636 TEX101Q9BY14 249 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 PBX4Q9BYU1 374 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 OPA3Q9H6K4 179 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 TUBGCP6Q96RT7 1819 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 FER1L6Q2WGJ9 1857 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 DLEC1Q9Y238 1755 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 INHBBP09529 407 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 AKR1C3P42330 323 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 MEOX2P50222 304 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 SLC25A30Q5SVS4 291 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 LAIR1Q6GTX8 287 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 NECAP1Q8NC96 275 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 CCDC74AQ96AQ1 378 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 SUCNR1Q9BXA5 334 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 C20orf141Q9NUB4 165 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 TMEM272A0A1B0GTI8 110 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 FRG2CA6NGY1 282 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 SPINT2O43291 252 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 CLN5O75503 358 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 TCN2P20062 427 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 LYSMD4Q5XG99 296 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 SYT13Q7L8C5 426 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 STPG2Q8N412 459 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 C17orf47Q8NEP4 570 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 BCL7CQ8WUZ0 217 aaPredicted RBP11.61□□□□□ -0.55
COL3A1-201ENST00000304636 PRRX2Q99811 253 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 ZNF331Q9NQX6 463 aaPredicted RBP11.61□□□□□ -0.55
COL3A1-201ENST00000304636 CBY1Q9Y3M2 126 aa11.61□□□□□ -0.55
COL3A1-201ENST00000304636 MYH14Q7Z406 1995 aaKnown RBP11.61□□□□□ -0.55
COL3A1-201ENST00000304636 NUMA1Q14980 2115 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 ARPC3O15145 178 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 TIAL1Q01085 375 aaKnown RBP eCLIP11.6□□□□□ -0.55
COL3A1-201ENST00000304636 MOGAT2Q3SYC2 334 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 NCR3LG1Q68D85 454 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 APOA2P02652 100 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 PNLIPRP2P54317 469 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 ZNF79Q15937 498 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 MIDNQ504T8 468 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 RBMXL3Q8N7X1 1067 aaKnown RBP11.6□□□□□ -0.55
COL3A1-201ENST00000304636 SLC35G3Q8N808 338 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 MORN4Q8NDC4 146 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 SPPL3Q8TCT6 385 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 CCL27Q9Y4X3 112 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 LRP12Q9Y561 859 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 BCAT2O15382 392 aaPredicted RBP11.6□□□□□ -0.55
COL3A1-201ENST00000304636 ZNF90Q03938 601 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 HABP2Q14520 560 aaPredicted RBP11.6□□□□□ -0.55
COL3A1-201ENST00000304636 SPANXN5Q5MJ07 72 aa11.6□□□□□ -0.55
COL3A1-201ENST00000304636 ASB16Q96NS5 453 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms