RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ANGPTL4Q9BY76 406 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 MYO7BQ6PIF6 2116 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 RPS10-NUDT3A0A1W2PQS6 291 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 WDPCPO95876 746 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 GNB3P16520 340 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 ZNF93P35789 620 aaPredicted RBP17.73■□□□□ 0.43
VPS53-201ENST00000291074 RPS18P62269 152 aaKnown RBP17.73■□□□□ 0.43
VPS53-201ENST00000291074 H3F3AP84243 136 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 MC2RQ01718 297 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 TMEM81Q6P7N7 255 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 NAA40Q86UY6 237 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 OR5AS1Q8N127 324 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 ZNF283Q8N7M2 679 aa17.73■□□□□ 0.43
VPS53-201ENST00000291074 NCKAP5O14513 1909 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 LOC100509620A0A075B734 347 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 LOC105371267A0A1B0GV96 52 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 L7N2F9 121 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 ZIC3O60481 467 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 BPNT1O95861 308 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 ZNF17P17021 662 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 CDNFQ49AH0 187 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 PNPLA2Q96AD5 504 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 MOB1AQ9H8S9 216 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 GLTPQ9NZD2 209 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 FBXO4Q9UKT5 387 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 NSG1A0A0A6YYJ2 146 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 F5H5P2 479 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 PMS2P2O95744 297 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 IFNA7P01567 189 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 CD74P04233 296 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 OR4E1P0C645 316 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 ATPAF1Q5TC12 328 aaPredicted RBP17.72■□□□□ 0.43
VPS53-201ENST00000291074 PEAR1Q5VY43 1037 aaPredicted RBP17.72■□□□□ 0.43
VPS53-201ENST00000291074 C11orf88Q6PI97 169 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 RPS19BP1Q86WX3 136 aaKnown RBP17.72■□□□□ 0.43
VPS53-201ENST00000291074 OR13C8Q8NGS7 320 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 UQCC2Q9BRT2 126 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 SLCO5A1Q9H2Y9 848 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 SLC39A1Q9NY26 324 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 DKKL1Q9UK85 242 aa17.72■□□□□ 0.43
VPS53-201ENST00000291074 ARPC5O15511 151 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 CER1O95813 267 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 NFYAP23511 347 aaPredicted RBP17.71■□□□□ 0.43
VPS53-201ENST00000291074 OR3A4PP47883 348 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 CSNK1A1P48729 337 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 P2RX3P56373 397 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 ZNF101Q8IZC7 436 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 M1APQ8TC57 530 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 PAQR8Q8TEZ7 354 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 UBQLN2Q9UHD9 624 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 PRELID1Q9Y255 219 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 A0A087WZY1 265 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 LOC102725191A0A1B0GVB3 256 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 TRA2AQ13595 282 aaKnown RBP eCLIP17.71■□□□□ 0.43
VPS53-201ENST00000291074 KCNMB1Q16558 191 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 RAB12Q6IQ22 244 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 TMEM104Q8NE00 496 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 SLC39A7Q92504 469 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 ZNF775Q96BV0 537 aaPredicted RBP17.71■□□□□ 0.43
VPS53-201ENST00000291074 SFXN2Q96NB2 322 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 SELENOIQ9C0D9 397 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 HPF1Q9NWY4 346 aa17.71■□□□□ 0.43
VPS53-201ENST00000291074 FXYD6-FXYD2A0A087WZ82 144 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 A0A0G2JMM0 328 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 A0A1W2PP11 408 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 A0A1W2PPB8 328 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 A0A1W2PRS3 328 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 LINC00862A6NCI5 91 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 KIR3DP1A8MWS1 328 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 MCRIP1C9JLW8 97 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 RGS11O94810 467 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 DUSP3P51452 185 aaPredicted RBP17.7■□□□□ 0.42
VPS53-201ENST00000291074 RSPO4Q2I0M5 234 aaPredicted RBP17.7■□□□□ 0.42
VPS53-201ENST00000291074 LRRC18Q8N456 261 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 FXYD6Q9H0Q3 95 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 SH2D2AQ9NP31 389 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 UPB1Q9UBR1 384 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 TNFSF11O14788 317 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 TLX3O43711 291 aaPredicted RBP17.7■□□□□ 0.42
VPS53-201ENST00000291074 FOLR3P41439 243 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 DSCR4P56555 118 aaPredicted RBP17.7■□□□□ 0.42
VPS53-201ENST00000291074 ESCO2Q56NI9 601 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 SFRP5Q5T4F7 317 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 GLIPR1L1Q6UWM5 242 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 DTX1Q86Y01 620 aa17.7■□□□□ 0.42
VPS53-201ENST00000291074 MRPS28Q9Y2Q9 187 aaKnown RBP17.7■□□□□ 0.42
VPS53-201ENST00000291074 A0A0A6YYD4 124 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 OR5H15A6NDH6 313 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 MELTFP08582 738 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 LIN37Q96GY3 246 aaPredicted RBP17.69■□□□□ 0.42
VPS53-201ENST00000291074 SLC25A21Q9BQT8 299 aaPredicted RBP17.69■□□□□ 0.42
VPS53-201ENST00000291074 TECTAO75443 2155 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 A0A0J9YW62 118 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 PMS2P1A4D2B8 440 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 TMEM14DPA8MWL7 114 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 CD63P08962 238 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 FKBP2P26885 142 aaKnown RBP17.69■□□□□ 0.42
VPS53-201ENST00000291074 MLF1P58340 268 aa17.69■□□□□ 0.42
VPS53-201ENST00000291074 SEC61A1P61619 476 aaKnown RBP17.69■□□□□ 0.42
VPS53-201ENST00000291074 CDH26Q8IXH8 852 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms