RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 FAHP16930 419 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 PITPNBP48739 271 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 DGCR2P98153 550 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 RNPS1Q15287 305 aaKnown RBP14.41□□□□□ -0.1
USP4-201ENST00000265560 RIPPLY2Q5TAB7 128 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 BIVMQ86UB2 503 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 RPRMLQ8N4K4 120 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 OR1F12Q8NHA8 337 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 FAM46BQ96A09 425 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 CCDC32Q9BV29 185 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 OR2H1Q9GZK4 316 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 RAXQ9Y2V3 346 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 HEATR1Q9H583 2144 aaKnown RBP14.41□□□□□ -0.1
USP4-201ENST00000265560 IGHG3P01860 377 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 POU3F4P49335 361 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 FOXF2Q12947 444 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 ZNF57Q68EA5 555 aaPredicted RBP14.41□□□□□ -0.1
USP4-201ENST00000265560 CELF2-AS1Q8N7Q2 184 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 OR4D6Q8NGJ1 314 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 OR5D18Q8NGL1 313 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 AUNIPQ9H7T9 357 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 NIPAL2Q9H841 368 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 ITPR1Q14643 2758 aa14.41□□□□□ -0.1
USP4-201ENST00000265560 KDM4BO94953 1096 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 CST2P09228 141 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 C2orf76Q3KRA6 126 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 TRIQKQ629K1 86 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 CCBE1Q6UXH8 406 aaPredicted RBP14.4□□□□□ -0.1
USP4-201ENST00000265560 KRT74Q7RTS7 529 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 NAXEQ8NCW5 288 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 ITFG2Q969R8 447 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 CYYR1Q96J86 154 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 C11orf54Q9H0W9 315 aaPredicted RBP14.4□□□□□ -0.1
USP4-201ENST00000265560 PLEKHA1Q9HB21 404 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 LHX6Q9UPM6 363 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 TIMM10BQ9Y5J6 103 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 PLA2G10O15496 165 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 APOA1P02647 267 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 ZNF20P17024 532 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 HIST1H3AP68431 136 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 HIST2H3PS2Q5TEC6 136 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 HIST2H3AQ71DI3 136 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 C9orf106Q8NAJ2 232 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 MMP28Q9H239 520 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 RNF122Q9H9V4 155 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 STEAP1Q9UHE8 339 aa14.4□□□□□ -0.1
USP4-201ENST00000265560 FARS2O95363 451 aaKnown RBP14.39□□□□□ -0.11
USP4-201ENST00000265560 FAM87AP0C7U9 286 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 IGFBP3P17936 291 aaPredicted RBP14.39□□□□□ -0.11
USP4-201ENST00000265560 DCTDP32321 178 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 VWA1Q6PCB0 445 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 SIAH3Q8IW03 269 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 GDPD1Q8N9F7 314 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 FAM3DQ96BQ1 224 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 C1QTNF6Q9BXI9 259 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 ZMAT3Q9HA38 289 aaKnown RBP14.39□□□□□ -0.11
USP4-201ENST00000265560 ZNF724A8MTY0 619 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 LYZL6O75951 148 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 CDK2P24941 298 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 RFX2P48378 723 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 SCN1BQ07699 218 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 SPTSSAQ969W0 71 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 SGK3Q96BR1 496 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 CD300CQ08708 224 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 SCRN3Q0VDG4 424 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 RAB35Q15286 201 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 Q6ZS92 163 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 C19orf18Q8NEA5 215 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 THAP7Q9BT49 309 aaPredicted RBP14.39□□□□□ -0.11
USP4-201ENST00000265560 CNTD2Q9H8S5 307 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 MSRB2Q9Y3D2 182 aa14.39□□□□□ -0.11
USP4-201ENST00000265560 LOC100509620A0A075B734 347 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 MKRN2OSH3BPM6 223 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 RAD51DO75771 328 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 IL18BPO95998 194 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 MMP7P09237 267 aaPredicted RBP14.38□□□□□ -0.11
USP4-201ENST00000265560 CRYGSP22914 178 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 RAB11BQ15907 218 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 UBE2NLQ5JXB2 153 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 FGD2Q7Z6J4 655 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 PRDM14Q9GZV8 571 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 MEIS3P1A6NDR6 274 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 TPOP07202 933 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 HTR2CP28335 458 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 INPP1P49441 399 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 DEFA1P59665 94 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 DEFA3P59666 94 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 RAB1AP62820 205 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 ALKBH2Q6NS38 261 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 IGFL3Q6UXB1 125 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 RHOUQ7L0Q8 258 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 OR1M1Q8NGA1 313 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 SLC17A5Q9NRA2 495 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 PIGLQ9Y2B2 252 aa14.38□□□□□ -0.11
USP4-201ENST00000265560 C5orf49A4QMS7 147 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 ACKR3P25106 362 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 CISD2Q8N5K1 135 aaKnown RBP14.37□□□□□ -0.11
USP4-201ENST00000265560 OR5D14Q8NGL3 314 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 CLCF1Q9UBD9 225 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 ISPDA4D126 451 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms