RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TO15178 435 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 CRTAPO75718 401 aaPredicted RBP11.28□□□□□ -0.6
LIG1-201ENST00000263274 SNAPC5O75971 98 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 KNG1P01042 644 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 HOXB5P09067 269 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 FOLR1P15328 257 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 ZNF93P35789 620 aaPredicted RBP11.28□□□□□ -0.6
LIG1-201ENST00000263274 SLC6A9P48067 706 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 MPPED2Q15777 294 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 ACOT7LQ6ZUV0 252 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 CCDC36Q8IYA8 594 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 ARHGEF39Q8N4T4 335 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 OR10R2Q8NGX6 335 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 LIPHQ8WWY8 451 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 TMEM234Q8WY98 164 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 C11orf40Q8WZ69 217 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 SOX7Q9BT81 388 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 NKX6-2Q9C056 277 aaPredicted RBP11.28□□□□□ -0.6
LIG1-201ENST00000263274 HRH4Q9H3N8 390 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 ZNF576Q9H609 170 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 ESRP2Q9H6T0 727 aaKnown RBP11.28□□□□□ -0.6
LIG1-201ENST00000263274 SLC22A11Q9NSA0 550 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 RAB22AQ9UL26 194 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 C9orf170A2RU37 121 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 BLACEA4D250 179 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 SIGLEC6O43699 453 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 TMEM127O75204 238 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 ADAP1O75689 374 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 FABP1P07148 127 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 MEF2DQ14814 521 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 GLIPR1L1Q6UWM5 242 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 ZNF283Q8N7M2 679 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 ELP5Q8TE02 316 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 VN1R1Q9GZP7 353 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 MUC3AQ02505 3323 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 FRYLO94915 3013 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 METTL12A8MUP2 240 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 EIF4E2O60573 245 aaKnown RBP11.28□□□□□ -0.6
LIG1-201ENST00000263274 RD3LP0DJH9 198 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 SCAND1P57086 179 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 CLRN1P58418 232 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 S100A12P80511 92 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 HSF1Q00613 529 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 TEX30Q5JUR7 227 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 SLC26A10Q8NG04 563 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 CRB3Q9BUF7 120 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 RASL12Q9NYN1 266 aa11.28□□□□□ -0.6
LIG1-201ENST00000263274 TRBV23-1A0A0A0MS06 115 aa11.27□□□□□ -0.6
LIG1-201ENST00000263274 RAB27BO00194 218 aa11.27□□□□□ -0.6
LIG1-201ENST00000263274 BCL2L11O43521 198 aa11.27□□□□□ -0.6
LIG1-201ENST00000263274 CSRP1P21291 193 aaKnown RBP11.27□□□□□ -0.6
LIG1-201ENST00000263274 CASRP41180 1078 aa11.27□□□□□ -0.6
LIG1-201ENST00000263274 JMJD6Q6NYC1 403 aaPredicted RBP11.27□□□□□ -0.6
LIG1-201ENST00000263274 ZNF585AQ6P3V2 769 aa11.27□□□□□ -0.6
LIG1-201ENST00000263274 TMEM71Q6P5X7 295 aa11.27□□□□□ -0.6
LIG1-201ENST00000263274 TMPPEQ6ZT21 453 aa11.27□□□□□ -0.6
LIG1-201ENST00000263274 OR1M1Q8NGA1 313 aa11.27□□□□□ -0.6
LIG1-201ENST00000263274 OR5D14Q8NGL3 314 aa11.27□□□□□ -0.6
LIG1-201ENST00000263274 ZNF519Q8TB69 540 aa11.27□□□□□ -0.6
LIG1-201ENST00000263274 VSTM2BA6NLU5 285 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 SULT1C2O00338 296 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 OR2F2O95006 317 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 MECP2P51608 486 aaKnown RBP11.27□□□□□ -0.61
LIG1-201ENST00000263274 CHAF1BQ13112 559 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 OR2F1Q13607 317 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 INPP5JQ15735 1006 aaPredicted RBP11.27□□□□□ -0.61
LIG1-201ENST00000263274 SGCAQ16586 387 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 PAN3Q58A45 887 aaKnown RBP11.27□□□□□ -0.61
LIG1-201ENST00000263274 PTCRAQ6ISU1 281 aaPredicted RBP11.27□□□□□ -0.61
LIG1-201ENST00000263274 H1FNTQ75WM6 255 aaPredicted RBP11.27□□□□□ -0.61
LIG1-201ENST00000263274 KCNRGQ8N5I3 272 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 PBOV1Q9GZY1 135 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 PARP12Q9H0J9 701 aaKnown RBP11.27□□□□□ -0.61
LIG1-201ENST00000263274 SLCO5A1Q9H2Y9 848 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 BIN3Q9NQY0 253 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 FGF21Q9NSA1 209 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 TNFSF18Q9UNG2 199 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 KCNK7Q9Y2U2 307 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 MMACHCQ9Y4U1 282 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 VSIG8P0DPA2 414 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 RAB13P51153 203 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 RSPO4Q2I0M5 234 aaPredicted RBP11.27□□□□□ -0.61
LIG1-201ENST00000263274 SLC22A24Q8N4F4 322 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 OR4K17Q8NGC6 315 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 ZNF775Q96BV0 537 aaPredicted RBP11.27□□□□□ -0.61
LIG1-201ENST00000263274 OR5B2Q96R09 309 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 CMSS1Q9BQ75 279 aaKnown RBP11.27□□□□□ -0.61
LIG1-201ENST00000263274 NIT2Q9NQR4 276 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 SLC17A5Q9NRA2 495 aa11.27□□□□□ -0.61
LIG1-201ENST00000263274 ZNF701Q9NV72 531 aaPredicted RBP11.27□□□□□ -0.61
LIG1-201ENST00000263274 RALGAPA1Q6GYQ0 2036 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 TTLL8A6PVC2 850 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 YKT6O15498 198 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 SOCS1O15524 211 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 DXOO77932 396 aaKnown RBP11.26□□□□□ -0.61
LIG1-201ENST00000263274 IGKV3-11P04433 115 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 IFI6P09912 130 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 ZNF735P0CB33 412 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 AMY2BP19961 511 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 KCNJ3P48549 501 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms