RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 M1APQ8TC57 530 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 RAB24Q969Q5 203 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 CMBLQ96DG6 245 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 POM121Q96HA1 1249 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 SSUH2Q9Y2M2 353 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 COA3Q9Y2R0 106 aaPredicted RBP11.58□□□□□ -0.56
USP40-201ENST00000251722 CCDC163A0A0D9SF12 145 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 F6UZH7 168 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 TMPRSS11DO60235 418 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 CLINT1Q14677 625 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 TFAP2EQ6VUC0 442 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 GPR155Q7Z3F1 870 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 FBXL14Q8N1E6 418 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 FAM26EQ8N5C1 309 aa11.58□□□□□ -0.56
USP40-201ENST00000251722 DAZAP1Q96EP5 407 aaKnown RBP11.58□□□□□ -0.56
USP40-201ENST00000251722 IGHV1OR21-1A0A087WYE8 117 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 IGHV3-20A0A0C4DH32 117 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 A0A1B0GV50 99 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 ENSAO43768 121 aaKnown RBP11.57□□□□□ -0.56
USP40-201ENST00000251722 PRKRAO75569 313 aaKnown RBP11.57□□□□□ -0.56
USP40-201ENST00000251722 OR2J2O76002 312 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 HPP00738 406 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 RFX2P48378 723 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 SHBQ15464 509 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 CTU2Q2VPK5 515 aaKnown RBP11.57□□□□□ -0.56
USP40-201ENST00000251722 WDR34Q96EX3 536 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 SIAH2O43255 324 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 NFYBP25208 207 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 OR10A3P58181 314 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 ADIRFQ15847 76 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 Q8IYB0 196 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 ZNF808Q8N4W9 903 aaPredicted RBP11.57□□□□□ -0.56
USP40-201ENST00000251722 LINC00052Q96N35 136 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 GAB2Q9UQC2 676 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 GPR55Q9Y2T6 319 aaPredicted RBP11.57□□□□□ -0.56
USP40-201ENST00000251722 A0A0A6YYJ9 748 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 DIO1P49895 249 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 GFERP55789 205 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 OR52W1Q6IF63 320 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 ZNF764Q96H86 408 aaPredicted RBP11.57□□□□□ -0.56
USP40-201ENST00000251722 MRGPRX3Q96LB0 322 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 RALYQ9UKM9 306 aaKnown RBP11.57□□□□□ -0.56
USP40-201ENST00000251722 MFSD2BA6NFX1 497 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 UMAD1C9J7I0 102 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 CCKARP32238 428 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 PLA1AQ53H76 456 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 SFXN4Q6P4A7 337 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 ZNF620Q6ZNG0 422 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 OR2D3Q8NGH3 330 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 TSLPQ969D9 159 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 SLAMF6Q96DU3 332 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 LAMP3Q9UQV4 416 aa11.57□□□□□ -0.56
USP40-201ENST00000251722 TMEM82A0PJX8 343 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 TMEM218A2RU14 115 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 K7EQM0 130 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 DDTP30046 118 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 RIPPLY2Q5TAB7 128 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 Q6ZS52 159 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 OR52I1Q8NGK6 324 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 C20orf85Q9H1P6 137 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 TMEM200CA6NKL6 621 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 TBPP20226 339 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 BCKDHBP21953 392 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 CATSPERDQ86XM0 798 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 SLC35G3Q8N808 338 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 BVESQ8NE79 360 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 ALX4Q9H161 411 aaPredicted RBP11.56□□□□□ -0.56
USP40-201ENST00000251722 PPP1R3CQ9UQK1 317 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 FBP1P09467 338 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 SMAD2Q15796 467 aaKnown RBP11.56□□□□□ -0.56
USP40-201ENST00000251722 RTL8BQ17RB0 113 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 DLEU7Q6UYE1 221 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 LGI3Q8N145 548 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 GABRG1Q8N1C3 465 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 FAM3DQ96BQ1 224 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 FGGYQ96C11 551 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 SLAMF8Q9P0V8 285 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 H7C1C5 153 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 M0R135 149 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 MMP11P24347 488 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 EDDM3BP56851 147 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 RGS7BPQ6MZT1 257 aaPredicted RBP11.56□□□□□ -0.56
USP40-201ENST00000251722 B3GLCTQ6Y288 498 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 NUFIP2Q7Z417 695 aaKnown RBP11.56□□□□□ -0.56
USP40-201ENST00000251722 RBMXL3Q8N7X1 1067 aaKnown RBP11.56□□□□□ -0.56
USP40-201ENST00000251722 GPR119Q8TDV5 335 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 ZNF799Q96GE5 643 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 GABARAPL3Q9BY60 117 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 ZCCHC4Q9H5U6 513 aa11.56□□□□□ -0.56
USP40-201ENST00000251722 PRSS37A4D1T9 235 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 TAAR5O14804 337 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 ZNF250P15622 560 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 OR5I1Q13606 314 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 RAB35Q15286 201 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 ACKR1Q16570 336 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 ZNF750Q32MQ0 723 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 RNLSQ5VYX0 342 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 OVCH2Q7RTZ1 564 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 COMMD1Q8N668 190 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 OR4D6Q8NGJ1 314 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms