RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MIDNQ504T8 468 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SMUG1Q53HV7 270 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PSMG4Q5JS54 123 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ALKAL2Q6UX46 152 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ABHD15Q6UXT9 468 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SLC22A24Q8N4F4 322 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 C10orf126Q8N4M7 172 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 DCBLD1Q8N8Z6 715 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ADAMTS16Q8TE57 1224 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 DDB2Q92466 427 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TMIGD2Q96BF3 282 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 BIRC7Q96CA5 298 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 THAP7Q9BT49 309 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 AGO4Q9HCK5 861 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 DMRT3Q9NQL9 472 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 C1orf167Q5SNV9 1468 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TRBV23OR9-2A0A075B6M9 112 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TCRBV5S2A0A599 114 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CDHR4A6H8M9 788 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OOEPA6NGQ2 149 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CEBPZOSA8MTT3 80 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 FOXH1O75593 365 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 MRPL3P09001 348 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 FABP4P15090 132 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PCGF2P35227 344 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 RABGGTBP53611 331 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CLDN2P57739 230 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SOX4Q06945 474 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 ATP6V1FQ16864 119 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 COX19Q49B96 90 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TIMM23BQ5SRD1 257 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TMEM244Q5VVB8 128 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PRSS48Q7RTY5 328 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CDC20BQ86Y33 519 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 BRI3BPQ8WY22 251 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 WDFY2Q96P53 400 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 LHPPQ9H008 270 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OSGIN2Q9Y236 505 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ZNF281Q9Y2X9 895 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 COL3A1P02461 1466 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 TMEM218A2RU14 115 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CCSO14618 274 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 NME2P1O60361 137 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PRSS23O95084 383 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CRPP02741 224 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ATXN1LP0C7T5 689 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 OR13C7P0DN81 318 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 IGFBP2P18065 325 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 MICBQ29980 383 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ZNF770Q6IQ21 691 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 IL34Q6ZMJ4 242 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 FAM183BPQ6ZVS7 135 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 UBE3DQ7Z6J8 389 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CMC1Q7Z7K0 106 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CLEC10AQ8IUN9 316 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 Q8IYB0 196 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PLPP7Q8NBV4 271 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR52E1Q8NGJ3 308 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR51T1Q8NGJ9 327 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR4A4PQ8NGN8 299 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR4F5Q8NH21 305 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 NUDT8Q8WV74 236 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 RNF141Q8WVD5 230 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 MUL1Q969V5 352 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OR4F4Q96R69 305 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 HELZ2Q9BYK8 2649 aaKnown RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 TRAV34A0A0B4J273 112 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 A0A0U1RQF3 1178 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 WNT7AO00755 349 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PPP1R11O60927 126 aaPredicted RBP2.55□□□□□ -2
SCN1A-219ENST00000641575 COX6CP09669 75 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CXCL8P10145 99 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 GRPRP30550 384 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PYCR1P32322 319 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SSPNQ14714 243 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 C9orf57Q5W0N0 161 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 DEFB106AQ8N104 65 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 NPEPL1Q8NDH3 523 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 GABRG3Q99928 467 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SPNS1Q9H2V7 528 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CHST7Q9NS84 486 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CORTO00230 105 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SELENOFO60613 162 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 LMX1BO60663 402 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 SOX14O95416 240 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TSPAN13O95857 204 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 THY1P04216 161 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PRSS2P07478 247 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ACRP10323 421 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CKMT2P17540 419 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 ATF1P18846 271 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PCSK6P29122 969 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 MPGP29372 298 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PRSS3P35030 304 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 CA5AP35218 305 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 TGFBR1P36897 503 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 PLP1P60201 277 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 MGAT3Q09327 533 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 GALNT2Q10471 571 aa2.55□□□□□ -2
SCN1A-219ENST00000641575 OPCMLQ14982 345 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms