RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PRR23D2P0DMB1 279 aaPredicted RBP16.34■□□□□ 0.21
CLN3-260ENST00000637578 PAICSP22234 425 aaKnown RBP16.34■□□□□ 0.21
CLN3-260ENST00000637578 GGT2P36268 569 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 RGS6P49758 472 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 CPOQ8IVL8 374 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 LINC01356Q8N9X3 169 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 CLDND2Q8NHS1 167 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 HAVCR1Q96D42 359 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 DIRC2Q96SL1 478 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 BEX2Q9BXY8 128 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 SAP30LQ9HAJ7 183 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 CYB5R1Q9UHQ9 305 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 POLR1DQ9Y2S0 133 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 SVEP1Q4LDE5 3571 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 PPIHO43447 177 aaKnown RBP16.34■□□□□ 0.21
CLN3-260ENST00000637578 SPRY3O43610 288 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 CDC14BO60729 498 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 CDK5R2Q13319 367 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 TSTQ16762 297 aaKnown RBP16.34■□□□□ 0.21
CLN3-260ENST00000637578 ZMAT1Q5H9K5 638 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 SLC18B1Q6NT16 456 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 CORO6Q6QEF8 472 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 USP51Q70EK9 711 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 TCEANCQ8N8B7 351 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 BBS1Q8NFJ9 593 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 HRASLS5Q96KN8 279 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 RDH12Q96NR8 316 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 SHARPINQ9H0F6 387 aa16.34■□□□□ 0.21
CLN3-260ENST00000637578 MRPL22Q9NWU5 206 aaKnown RBP16.34■□□□□ 0.21
CLN3-260ENST00000637578 PURGQ9UJV8 347 aaKnown RBP16.34■□□□□ 0.21
CLN3-260ENST00000637578 CUBNO60494 3623 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 LMO4P61968 165 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 EFNB1P98172 346 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 FAM120AOSQ5T036 256 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 LYPD4Q6UWN0 246 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 COLCA1Q6ZS62 124 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 CXXC5Q7LFL8 322 aaKnown RBP16.33■□□□□ 0.2
CLN3-260ENST00000637578 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.33■□□□□ 0.2
CLN3-260ENST00000637578 CMBLQ96DG6 245 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 IL4I1Q96RQ9 567 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 MDFIQ99750 246 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 OR51V1Q9H2C8 321 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 MSL2Q9HCI7 577 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 PNRC2Q9NPJ4 139 aaKnown RBP16.33■□□□□ 0.2
CLN3-260ENST00000637578 KCNG2Q9UJ96 466 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 CACNG2Q9Y698 323 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 ATRQ13535 2644 aa16.33■□□□□ 0.2
CLN3-260ENST00000637578 FBN1P35555 2871 aaKnown RBP16.32■□□□□ 0.2
CLN3-260ENST00000637578 IFNA2P01563 188 aa16.32■□□□□ 0.2
CLN3-260ENST00000637578 RAC2P15153 192 aa16.32■□□□□ 0.2
CLN3-260ENST00000637578 FBXW12Q6X9E4 464 aa16.32■□□□□ 0.2
CLN3-260ENST00000637578 CFAP77Q6ZQR2 320 aa16.32■□□□□ 0.2
CLN3-260ENST00000637578 Q6ZR03 302 aa16.32■□□□□ 0.2
CLN3-260ENST00000637578 OR6K6Q8NGW6 343 aa16.32■□□□□ 0.2
CLN3-260ENST00000637578 FAM81AQ8TBF8 368 aa16.32■□□□□ 0.2
CLN3-260ENST00000637578 TMEM163Q8TC26 289 aa16.32■□□□□ 0.2
CLN3-260ENST00000637578 ELMOD3Q96FG2 381 aa16.32■□□□□ 0.2
CLN3-260ENST00000637578 PITX2Q99697 317 aa16.32■□□□□ 0.2
CLN3-260ENST00000637578 FAM118AQ9NWS6 357 aa16.32■□□□□ 0.2
CLN3-260ENST00000637578 B4DSR2 109 aa16.31■□□□□ 0.2
CLN3-260ENST00000637578 TPD52L2O43399 206 aaKnown RBP16.31■□□□□ 0.2
CLN3-260ENST00000637578 TIMM8AO60220 97 aaPredicted RBP16.31■□□□□ 0.2
CLN3-260ENST00000637578 HLA-DQA2P01906 255 aa16.31■□□□□ 0.2
CLN3-260ENST00000637578 THBS2P35442 1172 aa16.31■□□□□ 0.2
CLN3-260ENST00000637578 CDC42P60953 191 aa16.31■□□□□ 0.2
CLN3-260ENST00000637578 ECH1Q13011 328 aa16.31■□□□□ 0.2
CLN3-260ENST00000637578 HFEQ30201 348 aa16.31■□□□□ 0.2
CLN3-260ENST00000637578 LINC01590Q5TEZ4 76 aa16.31■□□□□ 0.2
CLN3-260ENST00000637578 BCDIN3DQ7Z5W3 292 aaKnown RBP16.31■□□□□ 0.2
CLN3-260ENST00000637578 APOBEC3DQ96AK3 386 aaPredicted RBP16.31■□□□□ 0.2
CLN3-260ENST00000637578 EGLN1Q9GZT9 426 aa16.31■□□□□ 0.2
CLN3-260ENST00000637578 GMPPBQ9Y5P6 360 aa16.31■□□□□ 0.2
CLN3-260ENST00000637578 LOC100130705A0A1B0GUX0 176 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 TVP23AA6NH52 213 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 DVL1P1P54792 670 aaPredicted RBP16.3■□□□□ 0.2
CLN3-260ENST00000637578 KLHL12Q53G59 568 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 SPRNQ5BIV9 151 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 LINC00346Q8IVM7 164 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 ZNF511Q8NB15 262 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 OR5L1Q8NGL2 311 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 UBE2FQ969M7 185 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 CDADC1Q9BWV3 514 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 C1QTNF5Q9BXJ0 243 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 VCXQ9H320 206 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 IMPAD1Q9NX62 359 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 TREM2Q9NZC2 230 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 FAM157AC9JC47 383 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 CLDN25C9JDP6 229 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 PRODHO43272 600 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 SLC2A5P22732 501 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 FMO3P31513 532 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 PCK2Q16822 640 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 CR1LQ2VPA4 569 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 OR8J1Q8NGP2 316 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 OR2AJ1Q8NGZ0 328 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 ZMYND19Q96E35 227 aaPredicted RBP16.3■□□□□ 0.2
CLN3-260ENST00000637578 MAP6Q96JE9 813 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 ATF6BQ99941 703 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 NARFLQ9H6Q4 476 aa16.3■□□□□ 0.2
CLN3-260ENST00000637578 WIPI2Q9Y4P8 454 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms