RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 UBE2FQ969M7 185 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 KCNJ15Q99712 375 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 APOL4Q9BPW4 351 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 GPR160Q9UJ42 338 aa15.52■□□□□ 0.08
CLN3-243ENST00000635973 YLPM1P49750 1951 aaKnown RBP15.52■□□□□ 0.07
CLN3-243ENST00000635973 ARFGEF3Q5TH69 2177 aa15.52■□□□□ 0.07
CLN3-243ENST00000635973 SNTNA6NMZ2 147 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 H3BSA7 217 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 J3QW42 95 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 SLC16A6O15403 523 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 MPZL2O60487 215 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 CLPTM1O96005 669 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 LCATP04180 440 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 ERCC1P07992 297 aaPredicted RBP15.51■□□□□ 0.07
CLN3-243ENST00000635973 H2BFMP0C1H6 154 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 ZNF250P15622 560 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 USF1P22415 310 aaPredicted RBP15.51■□□□□ 0.07
CLN3-243ENST00000635973 EVX1P49640 407 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 PRKXP51817 358 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 HCCSP53701 268 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 SNRPGP62308 76 aaKnown RBP15.51■□□□□ 0.07
CLN3-243ENST00000635973 POU4F2Q12837 409 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 ALKBH6Q3KRA9 238 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 KRTAP27-1Q3LI81 207 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 MEDAGQ5VYS4 303 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.51■□□□□ 0.07
CLN3-243ENST00000635973 SLC35F2Q8IXU6 374 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 ZNF283Q8N7M2 679 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 KLF14Q8TD94 323 aaPredicted RBP15.51■□□□□ 0.07
CLN3-243ENST00000635973 RNF133Q8WVZ7 376 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 AMELYQ99218 206 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 PIMREGQ9BSJ6 248 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 ADGRL4Q9HBW9 690 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 SLCO1C1Q9NYB5 712 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 PTTG3PQ9NZH4 202 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 TAAR3PQ9P1P4 343 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.51■□□□□ 0.07
CLN3-243ENST00000635973 KLHDC2Q9Y2U9 406 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 N6AMT1Q9Y5N5 214 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 TMEM14AQ9Y6G1 99 aa15.51■□□□□ 0.07
CLN3-243ENST00000635973 SONP18583 2426 aaKnown RBP15.51■□□□□ 0.07
CLN3-243ENST00000635973 E9PQ18 207 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 ENTPD6O75354 484 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 LY6HO94772 140 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 MT-ND5P03915 603 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 TUBG1P23258 451 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 MPV17P39210 176 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 ALDH3B1P43353 468 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 CX3CR1P49238 355 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 PPOXP50336 477 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 IL5RAQ01344 420 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 TMED1Q13445 227 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 MAD2L1BPQ15013 274 aaPredicted RBP15.5■□□□□ 0.07
CLN3-243ENST00000635973 MOGQ16653 247 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 C6orf52Q5T4I8 152 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 MBNL2Q5VZF2 373 aaKnown RBP15.5■□□□□ 0.07
CLN3-243ENST00000635973 TTC23Q5W5X9 447 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 CYB5R2Q6BCY4 276 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 KCTD18Q6PI47 426 aaPredicted RBP15.5■□□□□ 0.07
CLN3-243ENST00000635973 DRAM2Q6UX65 266 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 ENTHD1Q8IYW4 607 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 DHRSXQ8N5I4 330 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 MARS2Q96GW9 593 aaKnown RBP15.5■□□□□ 0.07
CLN3-243ENST00000635973 DOK1Q99704 481 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 TTTY10Q9BZA0 68 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 VCX3BQ9H321 246 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 POFUT1Q9H488 388 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 TUBG2Q9NRH3 451 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 CLN6Q9NWW5 311 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 HAO2Q9NYQ3 351 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 MYEF2Q9P2K5 600 aaKnown RBP15.5■□□□□ 0.07
CLN3-243ENST00000635973 STARD10Q9Y365 291 aa15.5■□□□□ 0.07
CLN3-243ENST00000635973 TMEM129A0AVI4 362 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 NDUFS8O00217 210 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 DLGAP1O14490 977 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 APOL3O95236 402 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 APOC1P02654 83 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 ANXA2P07355 339 aaKnown RBP15.49■□□□□ 0.07
CLN3-243ENST00000635973 ADRA2AP08913 450 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 SBK2P0C263 348 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 OPRL1P41146 370 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 MALLQ13021 153 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 OCLNQ16625 522 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 RSPO1Q2MKA7 263 aaPredicted RBP15.49■□□□□ 0.07
CLN3-243ENST00000635973 LRRN1Q6UXK5 716 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 KRT77Q7Z794 578 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 ASB17Q8WXJ9 295 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 Q96MT0 163 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 SORCS2Q96PQ0 1159 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 MNTQ99583 582 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 ADI1Q9BV57 179 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 C1QTNF5Q9BXJ0 243 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 RAB1BQ9H0U4 201 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 MYOZ1Q9NP98 299 aaPredicted RBP15.49■□□□□ 0.07
CLN3-243ENST00000635973 AASSQ9UDR5 926 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 CDC42EP3Q9UKI2 254 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 IKZF2Q9UKS7 526 aa15.49■□□□□ 0.07
CLN3-243ENST00000635973 IGLV3-9A0A075B6K5 115 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 PLSCR5A0PG75 271 aa15.48■□□□□ 0.07
CLN3-243ENST00000635973 ZNF670-ZNF695F2Z2N8 137 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms