RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 IL5RAQ01344 420 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 TMED1Q13445 227 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 MAD2L1BPQ15013 274 aaPredicted RBP15.5■□□□□ 0.07
CLN3-239ENST00000628023 MOGQ16653 247 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 MBNL2Q5VZF2 373 aaKnown RBP15.5■□□□□ 0.07
CLN3-239ENST00000628023 TTC23Q5W5X9 447 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 KCTD18Q6PI47 426 aaPredicted RBP15.5■□□□□ 0.07
CLN3-239ENST00000628023 DRAM2Q6UX65 266 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 ENTHD1Q8IYW4 607 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 DHRSXQ8N5I4 330 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 MARS2Q96GW9 593 aaKnown RBP15.5■□□□□ 0.07
CLN3-239ENST00000628023 DOK1Q99704 481 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 TTTY10Q9BZA0 68 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 VCX3BQ9H321 246 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 POFUT1Q9H488 388 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 BARX1Q9HBU1 254 aaPredicted RBP15.5■□□□□ 0.07
CLN3-239ENST00000628023 TUBG2Q9NRH3 451 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 CLN6Q9NWW5 311 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 HAO2Q9NYQ3 351 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 MYEF2Q9P2K5 600 aaKnown RBP15.5■□□□□ 0.07
CLN3-239ENST00000628023 STARD10Q9Y365 291 aa15.5■□□□□ 0.07
CLN3-239ENST00000628023 FN1P02751 2386 aaKnown RBP15.49■□□□□ 0.07
CLN3-239ENST00000628023 CSPG4Q6UVK1 2322 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 TMEM129A0AVI4 362 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 DLGAP1O14490 977 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 APOL3O95236 402 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 APOC1P02654 83 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 ANXA2P07355 339 aaKnown RBP15.49■□□□□ 0.07
CLN3-239ENST00000628023 ADRA2AP08913 450 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 SBK2P0C263 348 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 OPRL1P41146 370 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 MALLQ13021 153 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 OCLNQ16625 522 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 RSPO1Q2MKA7 263 aaPredicted RBP15.49■□□□□ 0.07
CLN3-239ENST00000628023 LRRN1Q6UXK5 716 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 KRT77Q7Z794 578 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 ASB17Q8WXJ9 295 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 Q96MT0 163 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 MNTQ99583 582 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 ADI1Q9BV57 179 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 C1QTNF5Q9BXJ0 243 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 RAB1BQ9H0U4 201 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 AASSQ9UDR5 926 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 IKZF2Q9UKS7 526 aa15.49■□□□□ 0.07
CLN3-239ENST00000628023 IGLV3-9A0A075B6K5 115 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 PLSCR5A0PG75 271 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 ZNF670-ZNF695F2Z2N8 137 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 PHYHO14832 338 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 TIMM8AO60220 97 aaPredicted RBP15.48■□□□□ 0.07
CLN3-239ENST00000628023 IGHV4-39P01824 125 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 SLC2A1P11166 492 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 NAT2P11245 290 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 ALOX5APP20292 161 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 OTX1P32242 354 aaPredicted RBP15.48■□□□□ 0.07
CLN3-239ENST00000628023 SLC25A30Q5SVS4 291 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 RHOUQ7L0Q8 258 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 SETD9Q8NE22 299 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 OR10H4Q8NGA5 316 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 RNFT2Q96EX2 444 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 SORCS2Q96PQ0 1159 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 TBX5Q99593 518 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 TPK1Q9H3S4 243 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 MS4A5Q9H3V2 200 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 COPS3Q9UNS2 423 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 ARFGEF3Q5TH69 2177 aa15.48■□□□□ 0.07
CLN3-239ENST00000628023 PSMD9O00233 223 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 TBX1O43435 398 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 NDUFS7O75251 213 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 CLIC3O95833 236 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 IGHV3-13P01766 116 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 CAPGP40121 348 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 MTNR1AP48039 350 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 CXCR4P61073 352 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 HLXQ14774 488 aaPredicted RBP15.47■□□□□ 0.07
CLN3-239ENST00000628023 SNAI3Q3KNW1 292 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 ZNF691Q5VV52 312 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 ZNF322Q6U7Q0 402 aaPredicted RBP15.47■□□□□ 0.07
CLN3-239ENST00000628023 MRPL21Q7Z2W9 205 aaKnown RBP15.47■□□□□ 0.07
CLN3-239ENST00000628023 NAA40Q86UY6 237 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 CMBLQ96DG6 245 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 MROQ9BYG7 248 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 SP140LQ9H930 580 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 BRD7Q9NPI1 651 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 LRP12Q9Y561 859 aa15.47■□□□□ 0.07
CLN3-239ENST00000628023 ATP6V1G2O95670 118 aa15.46■□□□□ 0.07
CLN3-239ENST00000628023 RAC2P15153 192 aa15.46■□□□□ 0.07
CLN3-239ENST00000628023 GABRB1P18505 474 aa15.46■□□□□ 0.07
CLN3-239ENST00000628023 ZNF121P58317 390 aaPredicted RBP15.46■□□□□ 0.07
CLN3-239ENST00000628023 IL18R1Q13478 541 aa15.46■□□□□ 0.07
CLN3-239ENST00000628023 ZMAT1Q5H9K5 638 aa15.46■□□□□ 0.07
CLN3-239ENST00000628023 COLCA1Q6ZS62 124 aa15.46■□□□□ 0.07
CLN3-239ENST00000628023 FAM57BQ71RH2 274 aa15.46■□□□□ 0.07
CLN3-239ENST00000628023 ZCCHC24Q8N2G6 241 aaKnown RBP15.46■□□□□ 0.07
CLN3-239ENST00000628023 RHOXF1Q8NHV9 184 aa15.46■□□□□ 0.07
CLN3-239ENST00000628023 NRG4Q8WWG1 115 aa15.46■□□□□ 0.07
CLN3-239ENST00000628023 NIPAL2Q9H841 368 aa15.46■□□□□ 0.07
CLN3-239ENST00000628023 CGGBP1Q9UFW8 167 aaPredicted RBP15.46■□□□□ 0.07
CLN3-239ENST00000628023 PURGQ9UJV8 347 aaKnown RBP15.46■□□□□ 0.07
CLN3-239ENST00000628023 RRP15Q9Y3B9 282 aaKnown RBP15.46■□□□□ 0.07
CLN3-239ENST00000628023 H0YAE9 185 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms