RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 GSX1Q9H4S2 264 aaPredicted RBP11.5□□□□□ -0.57
LINC00540-202ENST00000616974 TBCCD1Q9NVR7 557 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 GMPPBQ9Y5P6 360 aa11.5□□□□□ -0.57
LINC00540-202ENST00000616974 LOC100130705A0A1B0GUX0 176 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 ZNF878C9JN71 531 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 SPRY3O43610 288 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 IGHV3-13P01766 116 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 LYNP07948 512 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 COL8A2P25067 703 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 RAD23AP54725 363 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 CXCR4P61073 352 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 CARTPTQ16568 116 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 TSTQ16762 297 aaKnown RBP11.49□□□□□ -0.57
LINC00540-202ENST00000616974 GLYATL3Q5SZD4 288 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 Q71RC1 249 aaPredicted RBP11.49□□□□□ -0.57
LINC00540-202ENST00000616974 OR10AD1Q8NGE0 317 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 OR8J1Q8NGP2 316 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 DLL4Q9NR61 685 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 SMPD3Q9NY59 655 aaPredicted RBP11.49□□□□□ -0.57
LINC00540-202ENST00000616974 LRP12Q9Y561 859 aa11.49□□□□□ -0.57
LINC00540-202ENST00000616974 RNF223E7ERA6 249 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 H7C1Q1 480 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 CDC14BO60729 498 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 HLA-DPB1P04440 258 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 CX3CR1P49238 355 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 ZNF121P58317 390 aaPredicted RBP11.48□□□□□ -0.57
LINC00540-202ENST00000616974 GFOD2Q3B7J2 385 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 ZNF718Q3SXZ3 478 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 SLC35D3Q5M8T2 416 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 MBNL2Q5VZF2 373 aaKnown RBP11.48□□□□□ -0.57
LINC00540-202ENST00000616974 USP51Q70EK9 711 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 SLC16A9Q7RTY1 509 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 C10orf67Q8IYJ2 551 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 CNIH3Q8TBE1 160 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 YIPF5Q969M3 257 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 TRMT61AQ96FX7 289 aaKnown RBP11.48□□□□□ -0.57
LINC00540-202ENST00000616974 APOL4Q9BPW4 351 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 WACQ9BTA9 647 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 ORC6Q9Y5N6 252 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 PMF1-BGLAPU3KQ54 211 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 ATRQ13535 2644 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 A0A096LNT2 108 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 H3BSH0 61 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 WNT9BO14905 357 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 CASQ2O14958 399 aaPredicted RBP11.48□□□□□ -0.57
LINC00540-202ENST00000616974 WBP4O75554 376 aaKnown RBP11.48□□□□□ -0.57
LINC00540-202ENST00000616974 PNPP00491 289 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 SBK2P0C263 348 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 PPOXP50336 477 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 CDC42P60953 191 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 RPS23P62266 143 aaKnown RBP11.48□□□□□ -0.57
LINC00540-202ENST00000616974 MFGE8Q08431 387 aaPredicted RBP11.48□□□□□ -0.57
LINC00540-202ENST00000616974 GGTLC2Q14390 218 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 FAM57BQ71RH2 274 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 ZNF283Q8N7M2 679 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 CYGBQ8WWM9 190 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 CNN2Q99439 309 aaKnown RBP11.48□□□□□ -0.57
LINC00540-202ENST00000616974 TMUB1Q9BVT8 246 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 ELOVL3Q9HB03 270 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 IMPAD1Q9NX62 359 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 ATPIF1Q9UII2 106 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 LAMP5Q9UJQ1 280 aa11.48□□□□□ -0.57
LINC00540-202ENST00000616974 PURGQ9UJV8 347 aaKnown RBP11.48□□□□□ -0.57
LINC00540-202ENST00000616974 C17orf100A8MU93 164 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 C3orf80F5H4A9 247 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 MLNRO43193 412 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 F12P00748 615 aaPredicted RBP11.47□□□□□ -0.57
LINC00540-202ENST00000616974 IGHV1-46P01743 117 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 GCH1P30793 250 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 EFNA4P52798 201 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 LAIR2Q6ISS4 152 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 SLC35F2Q8IXU6 374 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 APOBEC3DQ96AK3 386 aaPredicted RBP11.47□□□□□ -0.57
LINC00540-202ENST00000616974 KCNJ15Q99712 375 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 TEX12Q9BXU0 123 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 MYRFQ9Y2G1 1151 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 A0A1W2PQL4 384 aaPredicted RBP11.47□□□□□ -0.57
LINC00540-202ENST00000616974 TIMM8AO60220 97 aaPredicted RBP11.47□□□□□ -0.57
LINC00540-202ENST00000616974 TMCC2O75069 709 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 ANXA2P07355 339 aaKnown RBP11.47□□□□□ -0.57
LINC00540-202ENST00000616974 HTR1FP30939 366 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 AQP4P55087 323 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 TAF13Q15543 124 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 RNF166Q96A37 237 aaPredicted RBP11.47□□□□□ -0.57
LINC00540-202ENST00000616974 LYZL4Q96KX0 146 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 DCLRE1BQ9H816 532 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 RNPEPL1Q9HAU8 725 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 ENOPH1Q9UHY7 261 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 MRM2Q9UI43 246 aaKnown RBP11.47□□□□□ -0.57
LINC00540-202ENST00000616974 EDARQ9UNE0 448 aa11.47□□□□□ -0.57
LINC00540-202ENST00000616974 SLC22A31A6NKX4 558 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 SLC16A6O15403 523 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 TBX1O43435 398 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 DAOP14920 347 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 EVX1P49640 407 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 ZNF81P51508 661 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 BLVRAP53004 296 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 TPTEP56180 551 aa11.46□□□□□ -0.57
LINC00540-202ENST00000616974 ADARB1P78563 741 aaKnown RBP11.46□□□□□ -0.57
LINC00540-202ENST00000616974 ZNF85Q03923 595 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms