RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 PRSS44E7EML9 344 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 NFYBP25208 207 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 TNFRSF4P43489 277 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 GKN2Q86XP6 184 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 TSTD1Q8NFU3 115 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 S1PR5Q9H228 398 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 PRMT8Q9NR22 394 aaPredicted RBP11.3□□□□□ -0.6
LIG1-221ENST00000613670 PARPBPQ9NWS1 579 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 KLK13Q9UKR3 277 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 TNFSF18Q9UNG2 199 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 MED19A0JLT2 244 aaPredicted RBP11.3□□□□□ -0.6
LIG1-221ENST00000613670 ABCD4O14678 606 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 TMEM127O75204 238 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 ZNF43P17038 809 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 RAB13P51153 203 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 OR2B8PP59922 312 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 SNRPEP62304 92 aaKnown RBP11.3□□□□□ -0.6
LIG1-221ENST00000613670 NR0B2Q15466 257 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 EXD3Q8N9H8 876 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 HOXB13Q92826 284 aaPredicted RBP11.3□□□□□ -0.6
LIG1-221ENST00000613670 SLAMF9Q96A28 289 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 PTGES2Q9H7Z7 377 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 KCNJ16Q9NPI9 418 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 SLC22A11Q9NSA0 550 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 SUSD2Q9UGT4 822 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 PUS1Q9Y606 427 aaKnown RBP eCLIP11.3□□□□□ -0.6
LIG1-221ENST00000613670 MPDZO75970 2070 aa11.3□□□□□ -0.6
LIG1-221ENST00000613670 TNFSF14O43557 240 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 NME2P1O60361 137 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 CAV2P51636 162 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 SGCBQ16585 318 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 GAB4Q2WGN9 574 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 MEX3BQ6ZN04 569 aaKnown RBP11.29□□□□□ -0.6
LIG1-221ENST00000613670 ROBO4Q8WZ75 1007 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 LAT2Q9GZY6 243 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 PURGQ9UJV8 347 aaKnown RBP11.29□□□□□ -0.6
LIG1-221ENST00000613670 SCGNO76038 276 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 TPPPO94811 219 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 GLULP15104 373 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 MPGP29372 298 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 GPR3P46089 330 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 FAM189A2Q15884 450 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 FAM109BQ6ICB4 259 aaPredicted RBP11.29□□□□□ -0.6
LIG1-221ENST00000613670 ZNF529Q6P280 563 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 TFAP2EQ6VUC0 442 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 Q6ZRG5 221 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 LINC00518Q8N0U6 118 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 KCNG3Q8TAE7 436 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 ASH2LQ9UBL3 628 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 PLXNB3Q9ULL4 1909 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 ASXL3Q9C0F0 2248 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 SDK2Q58EX2 2172 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 CPED1A4D0V7 1026 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 G3V3Q6 166 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 TNFSF12O43508 249 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 ZNF354AO60765 605 aaPredicted RBP11.29□□□□□ -0.6
LIG1-221ENST00000613670 IL33O95760 270 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 MT-ATP6P00846 226 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 HLA-DOBP13765 273 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 FOXL2P58012 376 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 SLC26A5P58743 744 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 SLC16A13Q7RTY0 426 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 TERB2Q8NHR7 220 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 PIGTQ969N2 578 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 CTHRC1Q96CG8 243 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 AKR1E2Q96JD6 320 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 RBM24Q9BX46 236 aaKnown RBP11.29□□□□□ -0.6
LIG1-221ENST00000613670 NMNAT2Q9BZQ4 307 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 ZNF160Q9HCG1 818 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 ZNF304Q9HCX3 659 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 CD1AP06126 327 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 HEXBP07686 556 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 IGFBP4P22692 258 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 SSBP1Q04837 148 aaKnown RBP11.29□□□□□ -0.6
LIG1-221ENST00000613670 GRINAQ7Z429 371 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 BMPERQ8N8U9 685 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 SMCO4Q9NRQ5 59 aa11.29□□□□□ -0.6
LIG1-221ENST00000613670 RBM7Q9Y580 266 aaKnown RBP11.29□□□□□ -0.6
LIG1-221ENST00000613670 ALPK3Q96L96 1907 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 NOTCH4Q99466 2003 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 K7EQS6 105 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 LINC01565O15544 149 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 ITGB2P05107 769 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 OMGP23515 440 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 CBX5P45973 191 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 SKP2Q13309 424 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 RAB32Q13637 225 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 JMJD6Q6NYC1 403 aaPredicted RBP11.28□□□□□ -0.6
LIG1-221ENST00000613670 DDIT4LQ96D03 193 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 ZNF426Q9BUY5 554 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 TLNRD1Q9H1K6 362 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 ZCCHC4Q9H5U6 513 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.28□□□□□ -0.6
LIG1-221ENST00000613670 EXOSC3Q9NQT5 275 aaKnown RBP11.28□□□□□ -0.6
LIG1-221ENST00000613670 FAM230AA0A1W2PPH8 454 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 TRIM77I1YAP6 450 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 CRYBA1P05813 215 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 CRHP06850 196 aa11.28□□□□□ -0.6
LIG1-221ENST00000613670 SPP1P10451 314 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms