RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 RER1O15258 196 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 TSPAN2O60636 221 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF217O75362 1048 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 CNR1P21554 472 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 HSD11B1P28845 292 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 S100A10P60903 97 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 HSF1Q00613 529 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 TMEM71Q6P5X7 295 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 GKN2Q86XP6 184 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 MRGPRFQ96AM1 343 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 ZDHHC12Q96GR4 267 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 PHB2Q99623 299 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 FGF21Q9NSA1 209 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 ASH2LQ9UBL3 628 aa12.52□□□□□ -0.41
COL6A1-207ENST00000612273 TRIOBPQ9H2D6 2365 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF705EA8MWA4 302 aaPredicted RBP12.51□□□□□ -0.41
COL6A1-207ENST00000612273 DXOO77932 396 aaKnown RBP12.51□□□□□ -0.41
COL6A1-207ENST00000612273 TTRP02766 147 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 HOXB5P09067 269 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF20P17024 532 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 CTRB1P17538 263 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 AGTR1P30556 359 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 CASRP41180 1078 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 CTRB2Q6GPI1 263 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 GLIPR1L1Q6UWM5 242 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 OR4K15Q8NH41 348 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 SLC6A15Q9H2J7 730 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 LDAHQ9H6V9 325 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 TREM1Q9NP99 234 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 RASL12Q9NYN1 266 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 TNFSF18Q9UNG2 199 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 AHCTF1Q8WYP5 2266 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 COL6A3P12111 3177 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF93P35789 620 aaPredicted RBP12.51□□□□□ -0.41
COL6A1-207ENST00000612273 OR3A4PP47883 348 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 ROM1Q03395 351 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 IKZF1Q13422 519 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.51□□□□□ -0.41
COL6A1-207ENST00000612273 CDCP2Q5VXM1 449 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 RALGAPA1Q6GYQ0 2036 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 TFAP2EQ6VUC0 442 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF704Q6ZNC4 412 aaPredicted RBP12.51□□□□□ -0.41
COL6A1-207ENST00000612273 LYG2Q86SG7 212 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 NAA40Q86UY6 237 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 GTPBP8Q8N3Z3 284 aaPredicted RBP12.51□□□□□ -0.41
COL6A1-207ENST00000612273 ST7LQ8TDW4 575 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 CDCA3Q99618 268 aaPredicted RBP12.51□□□□□ -0.41
COL6A1-207ENST00000612273 HRH4Q9H3N8 390 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF768Q9H5H4 540 aaKnown RBP12.51□□□□□ -0.41
COL6A1-207ENST00000612273 CHMP1AQ9HD42 196 aaPredicted RBP12.51□□□□□ -0.41
COL6A1-207ENST00000612273 FAM96BQ9Y3D0 163 aa12.51□□□□□ -0.41
COL6A1-207ENST00000612273 C5orf63A6NC05 138 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 OR6C76A6NM76 312 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 CRTAPO75718 401 aaPredicted RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 FARS2O95363 451 aaKnown RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 NAGAP17050 411 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 PRAMEF20Q5VT98 475 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 HSD17B13Q7Z5P4 300 aaPredicted RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 FOXRED1Q96CU9 486 aaPredicted RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 PELOQ9BRX2 385 aaKnown RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 PBOV1Q9GZY1 135 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 GAREM1Q9H706 876 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 TUBAL3A6NHL2 446 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 G3V3Y1 287 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 RAMP1O60894 148 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 AQP8O94778 261 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 MT-ATP6P00846 226 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 SFTPBP07988 381 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 UBBP0CG47 229 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 UBCP0CG48 685 aaKnown RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 FASLGP48023 281 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 RPS27AP62979 156 aaKnown RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 UBA52P62987 128 aaKnown RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 CFHR1Q03591 330 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 OR1N1Q8NGS0 311 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 ZC3H10Q96K80 434 aaKnown RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 PRRT1Q99946 306 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 METTL8Q9H825 291 aaKnown RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 PCDHB16Q9NRJ7 776 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 A0A0D9SG52 128 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 LTBRP36941 435 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 SLC6A9P48067 706 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 PPIAP62937 165 aaKnown RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF260Q3ZCT1 412 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 TMEM244Q5VVB8 128 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 CLEC9AQ6UXN8 241 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 KCNRGQ8N5I3 272 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 OR1M1Q8NGA1 313 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 LIN37Q96GY3 246 aaPredicted RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 ARPC5LQ9BPX5 153 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 ZNF416Q9BWM5 594 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 NKX6-2Q9C056 277 aaPredicted RBP12.5□□□□□ -0.41
COL6A1-207ENST00000612273 FN3KRPQ9HA64 309 aa12.5□□□□□ -0.41
COL6A1-207ENST00000612273 MEGF11A6BM72 1044 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 MSGN1A6NI15 193 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 DNASE2O00115 360 aaPredicted RBP12.49□□□□□ -0.41
COL6A1-207ENST00000612273 OR2T1O43869 369 aa12.49□□□□□ -0.41
COL6A1-207ENST00000612273 IGFBP3P17936 291 aaPredicted RBP12.49□□□□□ -0.41
COL6A1-207ENST00000612273 ZBTB25P24278 435 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms