RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 DPY19L4Q7Z388 723 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 ERI1Q8IV48 349 aaKnown RBP13.75□□□□□ -0.21
LSM4-206ENST00000600289 ZNF454Q8N9F8 522 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 OR6N2Q8NGY6 317 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 RNF133Q8WVZ7 376 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 YIPF5Q969M3 257 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 OTULINQ96BN8 352 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 CIB1Q99828 191 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 PKP2Q99959 881 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 RBM4BQ9BQ04 359 aaKnown RBP13.75□□□□□ -0.21
LSM4-206ENST00000600289 OR51V1Q9H2C8 321 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 SEMA6AQ9H2E6 1030 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 SAP30LQ9HAJ7 183 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 TVP23BQ9NYZ1 205 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 PTTG3PQ9NZH4 202 aa13.75□□□□□ -0.21
LSM4-206ENST00000600289 IGHV4-61A0A0C4DH41 118 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 IQCF6A8MYZ5 107 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 LYNX1G3V0Z9 82 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 LYNX1P0DP58 116 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 SELEP16581 610 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 COL8A2P25067 703 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 EIF2B1Q14232 305 aaKnown RBP13.74□□□□□ -0.21
LSM4-206ENST00000600289 GGTLC2Q14390 218 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 BBS1Q8NFJ9 593 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 OTOSQ8NHW6 89 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 HPS1Q92902 700 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 ZMYND19Q96E35 227 aaPredicted RBP13.74□□□□□ -0.21
LSM4-206ENST00000600289 ELMOD3Q96FG2 381 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 COPS4Q9BT78 406 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 ABHD6Q9BV23 337 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 EGLN1Q9GZT9 426 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 ZNF275Q9NSD4 429 aaPredicted RBP13.74□□□□□ -0.21
LSM4-206ENST00000600289 DECR2Q9NUI1 292 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 USE1Q9NZ43 259 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 DYSFO75923 2080 aa13.74□□□□□ -0.21
LSM4-206ENST00000600289 MEGF8Q7Z7M0 2845 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 IGHV1-69-2A0A0G2JMI3 117 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 SPRY3O43610 288 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 PRKYO43930 277 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 LILRA1O75019 489 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 APOC1P02654 83 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 LCATP04180 440 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 EPHA2P29317 976 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 SLC15A1P46059 708 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 GZMKP49863 264 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 CHN2P52757 468 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 MALLQ13021 153 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 GK2Q14410 553 aaPredicted RBP13.73□□□□□ -0.21
LSM4-206ENST00000600289 HLXQ14774 488 aaPredicted RBP13.73□□□□□ -0.21
LSM4-206ENST00000600289 KLHL12Q53G59 568 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 LCN1P1Q5VSP4 162 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 Q6ZR03 302 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 NAA40Q86UY6 237 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 OR8G5Q8NG78 346 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 C1orf159Q96HA4 380 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 OPA3Q9H6K4 179 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 MSL2Q9HCI7 577 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.73□□□□□ -0.218e-7■■■■■ 27.2
LSM4-206ENST00000600289 ABCA1O95477 2261 aa13.73□□□□□ -0.21
LSM4-206ENST00000600289 CCDC182A6NF36 153 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 SAC3D1A6NKF1 404 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 SELENOFO60613 162 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 ALPLP05186 524 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 LYNP07948 512 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 IGHV4-31P0DP07 118 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 TNFSF4P23510 183 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 OPRL1P41146 370 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 GPR6P46095 362 aaPredicted RBP13.72□□□□□ -0.21
LSM4-206ENST00000600289 APOFQ13790 326 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 TAF13Q15543 124 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 TSTQ16762 297 aaKnown RBP13.72□□□□□ -0.21
LSM4-206ENST00000600289 AADACL4Q5VUY2 407 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 NXNL2Q5VZ03 156 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 USP51Q70EK9 711 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 SLC16A9Q7RTY1 509 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 TMEM163Q8TC26 289 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 TEAD3Q99594 435 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 YIPF3Q9GZM5 350 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 SP140LQ9H930 580 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 S100A14Q9HCY8 104 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 CENPMQ9NSP4 180 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 IL19Q9UHD0 177 aa13.72□□□□□ -0.21
LSM4-206ENST00000600289 SLC22A31A6NKX4 558 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 TPD52L2O43399 206 aaKnown RBP13.71□□□□□ -0.21
LSM4-206ENST00000600289 SLC6A9P48067 706 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 RPS7P62081 194 aaKnown RBP13.71□□□□□ -0.21
LSM4-206ENST00000600289 TNFAIP6P98066 277 aaPredicted RBP13.71□□□□□ -0.21
LSM4-206ENST00000600289 HFEQ30201 348 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 SNAI3Q3KNW1 292 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 C6orf52Q5T4I8 152 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 OR2T2Q6IF00 324 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 PGAP1Q75T13 922 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 PRSS45Q7RTY3 260 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 TCEANCQ8N8B7 351 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 OR13G1Q8NGZ3 307 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 SPSB4Q96A44 273 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 ZNF582Q96NG8 517 aaPredicted RBP13.71□□□□□ -0.21
LSM4-206ENST00000600289 AMELYQ99218 206 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 SLC30A2Q9BRI3 323 aa13.71□□□□□ -0.21
LSM4-206ENST00000600289 HAO2Q9NYQ3 351 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms